ncRNA ID | novel_vvi_miR131 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr3:17891543-17891645 [+] |
Reference genome | 12X |
Source | SRR1049370 |
Length | 21 |
Mature sequence(if miRNA) | 1 - CCCAUACACAUAUAGCCUAGU - 21 |
Stem-loop(if miRNA) |
--        C                     C      C    U  AAUA   CCCAUACA AUAUAGCCUAGUAACUUUCUC CCUAUU GAUG GG    U   |||||||| ||||||||||||||||||||| |||||| |||| ||    C   GGGUAUGU UAUAUCGGAUCAUUGAAAGAG GGAUAA CUAC CC    A CU        U                     A      A    U  CCAC |
Stem-loop sequence | CCCAUACACAUAUAGCCUAGUAACUUUCUCCCCUAUUCGAUGUGGAAUAUCACACCCCUCAUCAAAUAGGAGAGAAAGUUACUAGGCUAUAUUUGUAUGGGUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA139791.1 |
|
2.5 | TSA: Vitis vinifera Locus_8642_Transcript_6/10_Confidence_0.545.Vivi mRNA sequence | NA | coding protein | psRNATarget |