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BaseInfo

ncRNA ID novel_vvi_miR131
Species Vitis vinifera
Class miRNA
Genome position Chr3:17891543-17891645 [+]
Reference genome 12X
Source SRR1049370
Length 21
Mature sequence(if miRNA) 1 - CCCAUACACAUAUAGCCUAGU - 21
Stem-loop(if miRNA) --        C                     C      C    U  AAUA
  CCCAUACA AUAUAGCCUAGUAACUUUCUC CCUAUU GAUG GG    U
  |||||||| ||||||||||||||||||||| |||||| |||| ||    C
  GGGUAUGU UAUAUCGGAUCAUUGAAAGAG GGAUAA CUAC CC    A
CU        U                     A      A    U  CCAC
Stem-loop sequence CCCAUACACAUAUAGCCUAGUAACUUUCUCCCCUAUUCGAUGUGGAAUAUCACACCCCUCAUCAAAUAGGAGAGAAAGUUACUAGGCUAUAUUUGUAUGGGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA139791.1
ncRNA:21   UGAUCCGAUAUACACAUACCC   1
  *||=|||||*|||||||||||
targets:1519   CCUGGGCUAAAUGUGUAUGGG   1539

2.5 TSA: Vitis vinifera Locus_8642_Transcript_6/10_Confidence_0.545.Vivi mRNA sequence NA coding protein psRNATarget