ncRNA ID | novel_vvi_miR127 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr2:1237555-1237646 [+] |
Reference genome | 12X |
Source | SRR1049370;SRR1049371;SRR1049372;SRR1049373;SRR1048201;SRR1048206;SRR1048208;SRR1049289;SRR1528400;SRR1528401;SRR1049290;SRR1049291;SRR890731;SRR1049293;SRR1048203 |
Length | 21 |
Mature sequence(if miRNA) | 1 - ACUCUCCCUCAAGGGCUUCUG - 21 |
Stem-loop(if miRNA) |
--AC                    A    GG  --AUG   AUA   C     UCUCCCUCAAGGGCUUCUGC CUUU  CC     GCC   UAC A     |||||||||||||||||||| ||||  ||     |||   |||     AGGGGGAGUUCUCGAAGAUG GAGA  GG     CGG   GUG A AGUC                    G    AA  GUGAA   --G   U |
Stem-loop sequence | ACUCUCCCUCAAGGGCUUCUGCACUUUGGCCAUGGCCAUAUACCAAUGUGGGGCAAGUGGGAAAGAGGGUAGAAGCUCUUGAGGGGGACUGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_002263004.1 |
|
2.5 | PREDICTED: Vitis vinifera DELLA protein GAI (LOC100263271), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_002267502.3 |
|
2.5 | PREDICTED: Vitis vinifera scarecrow-like protein 21 (LOC100256348), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_019225532.1 |
|
2.5 | PREDICTED: Vitis vinifera uncharacterized LOC100265748 (LOC100265748), mRNA | NA | coding protein | psRNATarget |