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BaseInfo

ncRNA ID novel_vvi_miR127
Species Vitis vinifera
Class miRNA
Genome position Chr2:1237555-1237646 [+]
Reference genome 12X
Source SRR1049370;SRR1049371;SRR1049372;SRR1049373;SRR1048201;SRR1048206;SRR1048208;SRR1049289;SRR1528400;SRR1528401;SRR1049290;SRR1049291;SRR890731;SRR1049293;SRR1048203
Length 21
Mature sequence(if miRNA) 1 - ACUCUCCCUCAAGGGCUUCUG - 21
Stem-loop(if miRNA) --AC                    A    GG  --AUG   AUA   C
    UCUCCCUCAAGGGCUUCUGC CUUU  CC     GCC   UAC A
    |||||||||||||||||||| ||||  ||     |||   |||
    AGGGGGAGUUCUCGAAGAUG GAGA  GG     CGG   GUG A
AGUC                    G    AA  GUGAA   --G   U
Stem-loop sequence ACUCUCCCUCAAGGGCUUCUGCACUUUGGCCAUGGCCAUAUACCAAUGUGGGGCAAGUGGGAAAGAGGGUAGAAGCUCUUGAGGGGGACUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002263004.1
ncRNA:21   GUCUUCGGGAACUCCCUCUCA   1
  ==||||||=|||||||||||*
targets:752   UGGAAGCCUUUGAGGGAGAGA   772

2.5 PREDICTED: Vitis vinifera DELLA protein GAI (LOC100263271), mRNA NA coding protein psRNATarget
XM_002267502.3
ncRNA:21   GUCUUCGGGAACUCCCUCUCA   1
  ==||||||=|||||||||||*
targets:1341   UGGAAGCCUUUGAGGGAGAGA   1361

2.5 PREDICTED: Vitis vinifera scarecrow-like protein 21 (LOC100256348), mRNA NA coding protein psRNATarget
XM_019225532.1
ncRNA:21   GUCUUCGGGAACUCCCUCUCA   1
  *|||||||*|||||||||||*
targets:751   GAGAAGCCAUUGAGGGAGAGA   771

2.5 PREDICTED: Vitis vinifera uncharacterized LOC100265748 (LOC100265748), mRNA NA coding protein psRNATarget