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BaseInfo

ncRNA ID novel_vvi_miR116
Species Vitis vinifera
Class miRNA
Genome position Chr16:5436034-5436209 [-]
Reference genome 12X
Source SRR1049370
Length 24
Mature sequence(if miRNA) 1 - AGGCUAAUGGGUUCAAAGUAGACA - 24
Stem-loop(if miRNA) --        A GU   C     C    AA U       AU    ----   --A    C   U    CAUC        UA    GA    A
  UCUGCUUU G  CCA UAGCC UCAC  C UUAAAAU  GUCU    ACA   AUAC AGA GAGU    CCUUAUAA  GUGU  AAGA A
  |||||||| |  ||| ||||| ||||  | |||||||  ||||    |||   |||| ||| ||||    ||||||||  ||||  ||||
  AGAUGAAA U  GGU AUCGG AGUG  G AAUUUUG  UAGA    UGU   UAUG UCU CUCA    GGAAUAUU  UACA  UUCU G
AC        C UG   A     A    CG U       CG    UUGA   GCG    A   U    -ACA        --    -G    C
Stem-loop sequence UCUGCUUUAGGUCCACUAGCCCUCACAACUUUAAAAUAUGUCUACAAAUACCAGAUGAGUCAUCCCUUAUAAUAGUGUGAAAGAAAGCUCUUGACAUUUAUAAGGACAACUCUUCUAGUAUGCGUGUAGUUAGAUGCGUUUUAAUGGCGUGAAGGCUAAUGGGUUCAAAGUAGACA