ncRNA ID | novel_vvi_miR110 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr10:2595364-2595443 [-] |
Reference genome | 12X |
Source | SRR1048201;SRR1528363;SRR1048205;SRR1528370;SRR1528383;SRR1528408;SRR890731 |
Length | 21 |
Mature sequence(if miRNA) | 1 - CCAAGAUACUAUAACAUGGUC - 21 |
Stem-loop(if miRNA) |
--           G                 UA  U   G   CUAUGUUAUAG AUCUUGGAUAUGUAGAC  UA AGU G   ||||||||||| |||||||||||||||||  || |||   GGUACAAUAUC UAGAACCUGUACAUUUG  AU UCG A CU           A                 GC  C   U |
Stem-loop sequence | CUAUGUUAUAGGAUCUUGGAUAUGUAGACUAUAUAGUGGAUGCUCUACGGUUUACAUGUCCAAGAUACUAUAACAUGGUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA171718.1 |
|
2.5 | TSA: Vitis vinifera Locus_6830_Transcript_2/7_Confidence_0.364.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA171719.1 |
|
2.5 | TSA: Vitis vinifera Locus_6830_Transcript_5/7_Confidence_0.409.Vivi mRNA sequence | NA | coding protein | psRNATarget |