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BaseInfo

ncRNA ID novel_vvi_miR110
Species Vitis vinifera
Class miRNA
Genome position Chr10:2595364-2595443 [-]
Reference genome 12X
Source SRR1048201;SRR1528363;SRR1048205;SRR1528370;SRR1528383;SRR1528408;SRR890731
Length 21
Mature sequence(if miRNA) 1 - CCAAGAUACUAUAACAUGGUC - 21
Stem-loop(if miRNA) --           G                 UA  U   G
  CUAUGUUAUAG AUCUUGGAUAUGUAGAC  UA AGU G
  ||||||||||| |||||||||||||||||  || |||
  GGUACAAUAUC UAGAACCUGUACAUUUG  AU UCG A
CU           A                 GC  C   U
Stem-loop sequence CUAUGUUAUAGGAUCUUGGAUAUGUAGACUAUAUAGUGGAUGCUCUACGGUUUACAUGUCCAAGAUACUAUAACAUGGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA171718.1
ncRNA:21   CUGGUACAAUAUCAUAGAACC   1
  **|*|||||||*|||||||||
targets:902   UUCGAUGUUAUUGUAUCUUGG   922

2.5 TSA: Vitis vinifera Locus_6830_Transcript_2/7_Confidence_0.364.Vivi mRNA sequence NA coding protein psRNATarget
KA171719.1
ncRNA:21   CUGGUACAAUAUCAUAGAACC   1
  **|*|||||||*|||||||||
targets:1510   UUCGAUGUUAUUGUAUCUUGG   1530

2.5 TSA: Vitis vinifera Locus_6830_Transcript_5/7_Confidence_0.409.Vivi mRNA sequence NA coding protein psRNATarget