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BaseInfo

ncRNA ID novel_vvi_miR108
Species Vitis vinifera
Class miRNA
Genome position Chr1:9841028-9841240 [-]
Reference genome 12X
Source SRR1049296
Length 24
Mature sequence(if miRNA) 1 - GAGUGUUCCCAAUAUAGAGAAAGA - 24
Stem-loop(if miRNA) --            A          --   -AA               A       U      CAA        AA                       CACCACACC
  UUUCUCUAUAUU GGAACACUCA  GAG   AAAUUUAUUGUGUUA GUGAGUU UUUGCU   CGUUUUAA  ACUCGCAAAUGUGGAAUUUGAUA         C
  |||||||||||| ||||||||||  |||   ||||||||||||||| ||||||| ||||||   ||||||||  |||||||||||||||||||||||         U
  AAAGAGAUAUAA CCUUGUGAGU  UUC   UUUGAGUAACACGAU CACUCAA AGAUGA   GUAAAGUU  UGAGUGUUUACAUCUUAAACUAU         U
AG            C          GG   CUA               -       U      UUC        AC                       AACAGAACA
Stem-loop sequence UUUCUCUAUAUUAGGAACACUCAGAGAAAAAUUUAUUGUGUUAAGUGAGUUUUUUGCUCAACGUUUUAAAAACUCGCAAAUGUGGAAUUUGAUACACCACACCCUUACAAGACAAUAUCAAAUUCUACAUUUGUGAGUCAUUGAAAUGCUUAGUAGAUAACUCACUAGCACAAUGAGUUUAUCCUUGGUGAGUGUUCCCAAUAUAGAGAAAGA