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BaseInfo

ncRNA ID novel_vvi_miR107
Species Vitis vinifera
Class miRNA
Genome position Chr9:7352625-7352707 [+]
Reference genome 12X
Source SRR1049296
Length 24
Mature sequence(if miRNA) 1 - GGAAAUGGAUCUGGCGAAUCGCGA - 24
Stem-loop(if miRNA) --     U G     G G     -   -------G G  U   G   
  GGAAA G AUCUG C AAUCG CGA        U UC GAC AGCC
  ||||| | ||||| | ||||| |||        | || ||| |||A
  CCUUU C UAGAC G UUAGC GUU        G AG CUG UCGA
GG     - G     - -     U   AAGUCUAA G  U   -   
Stem-loop sequence GGAAAUGGAUCUGGCGAAUCGCGAGUGUCUGACGAGCCAAGCUGUCUGAGGAAUCUGAAUUGUCGAUUGCAGAUGCUUUCCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA139621.1
ncRNA:24   AGCGCUAAGCGGUCUAGGUAAAGG   1
  ||*|||||||||=|||||||||||
targets:219   UCACGAUUCGCCGGAUCCAUUUCC   242

1.5 TSA: Vitis vinifera Locus_266_Transcript_17/41_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget