A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_vvi_miR100
Species	Vitis vinifera
Class	miRNA
Genome position	Chr9:21823072-21823163 [+]
Reference genome	12X
Source	SRR1049296;SRR1048204;SRR1528361;SRR1528371;SRR1048205;SRR1528377;SRR1528381;SRR1048207;SRR1528383;SRR1528387;SRR1528389;SRR1528404;SRR1049289;SRR1528416
Length	25
Mature sequence(if miRNA)	68 - UCAGAAGUCAAUCCAAACAAGGUCU - 92
Stem-loop(if miRNA)	-- - A AA ACCU GUUUGGAUUGACUUCUGA AGGCUAAAAGCUCUUAUU G \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| C UGGA CAAACCUAACUGAAGACU UUCGGUUUUCGAGAAUAA U UC A C AU
Stem-loop sequence	ACCUGUUUGGAUUGACUUCUGAAAGGCUAAAAGCUCUUAUUAAGCUUAAAUAAGAGCUUUUGGCUUCUCAGAAGUCAAUCCAAACAAGGUCU

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

KA172695.1

ncRNA:25	UCUGGAACAAACCUAACUGAAGACU	1
	\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1709	AGGCCUUGUUUCGAUUGACUUAUGA	1733

2.5

TSA: Vitis vinifera Locus_1869_Transcript_3/8_Confidence_0.483.Vivi mRNA sequence

coding protein

KA172696.1

ncRNA:25	UCUGGAACAAACCUAACUGAAGACU	1
	\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1930	AGGCCUUGUUUCGAUUGACUUAUGA	1954

2.5

TSA: Vitis vinifera Locus_1869_Transcript_4/8_Confidence_0.552.Vivi mRNA sequence

coding protein

XM_002276288.4

ncRNA:25	UCUGGAACAAACCUAACUGAAGACU	1
	\|=\|\|*\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|
targets:1974	AUGCCCGGUUUGGGUUGACUUCUGA	1998

2.5

PREDICTED: Vitis vinifera transcription termination factor MTERF5, chloroplastic-like (LOC100256384), mRNA

coding protein