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BaseInfo

ncRNA ID	novel_vvi_miR93
Species	Vitis vinifera
Class	miRNA
Genome position	Chr8:12667186-12667270 [+]
Reference genome	12X
Source	SRR1049296;SRR1048204;SRR1048201;SRR1048207;SRR1528387;SRR1049290
Length	21
Mature sequence(if miRNA)	1 - AGCAUCAUCAAGAUUCACACC - 21
Stem-loop(if miRNA)	--                A  C -   -UGGAAG     U      AGCAUCAUCAAGAUUC CA C CAA       GGCAG GAUG   |||||||||||||||| || | |||       ||||| |||C   UCGUAGUAGUUCUAAG GU G GUU       CCGUC CUAA CG                A  A A   UUAGAAA     U
Stem-loop sequence	AGCAUCAUCAAGAUUCACACCCAAUGGAAGGGCAGUGAUGCAAUCUCUGCCAAAGAUUUUGAGAUGAGAAUCUUGAUGAUGCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA168557.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   ||||||||||||||||||||| targets:745   GGUGUGAAUCUUGAUGAUGCU   765 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12123_Transcript_3/4_Confidence_0.444.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA141640.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   *|||*|||||||||||||||| targets:507   UGUGGGAAUCUUGAUGAUGCU   527 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_11059_Transcript_1/3_Confidence_0.714.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA141641.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   *|||*|||||||||||||||| targets:507   UGUGGGAAUCUUGAUGAUGCU   527 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_11059_Transcript_2/3_Confidence_0.714.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA141642.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   *|||*|||||||||||||||| targets:507   UGUGGGAAUCUUGAUGAUGCU   527 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_11059_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166604.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   ||||*|||||*|||||||||| targets:1227   GGUGGGAAUCCUGAUGAUGCU   1247 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1071_Transcript_3/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166603.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   ||||*|||||*|||||||||| targets:1227   GGUGGGAAUCCUGAUGAUGCU   1247 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1071_Transcript_2/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166607.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   ||||*|||||*|||||||||| targets:1227   GGUGGGAAUCCUGAUGAUGCU   1247 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1071_Transcript_7/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166606.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   ||||*|||||*|||||||||| targets:1227   GGUGGGAAUCCUGAUGAUGCU   1247 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1071_Transcript_6/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166605.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   ||||*|||||*|||||||||| targets:1227   GGUGGGAAUCCUGAUGAUGCU   1247 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1071_Transcript_5/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA166608.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   ||||*|||||*|||||||||| targets:1227   GGUGGGAAUCCUGAUGAUGCU   1247 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1071_Transcript_8/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165581.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   **|||||||||||||||||** targets:732   CAUGUGAAUCUUGAUGAUGAC   752 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_15317_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165582.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   **|||||||||||||||||** targets:805   CAUGUGAAUCUUGAUGAUGAC   825 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_15317_Transcript_2/3_Confidence_0.571.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA169214.1	ncRNA:21   CCACACUUAGAACUACUACGA   1   **|||||=|*||||||||||| targets:302   UAUGUGAGUGUUGAUGAUGCU   322 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_27953_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002274559.3	ncRNA:21   CCACACUUAGAACUACUACGA   1   **|||||=|*||||||||||| targets:754   UAUGUGAGUGUUGAUGAUGCU   774 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable F-box protein At5g04010 (LOC100250432), mRNA	NA	coding protein	psRNATarget
XM_002277832.3	ncRNA:21   CCACACUUAGAACUACUACGA   1   |*|||*|||||||||||||*| targets:725   GCUGUAAAUCUUGAUGAUGAU   745 Target Full Sequence	2.5	PREDICTED: Vitis vinifera protein SODIUM POTASSIUM ROOT DEFECTIVE 3 (LOC100244737), mRNA	NA	coding protein	psRNATarget