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BaseInfo

ncRNA ID	novel_vvi_miR87
Species	Vitis vinifera
Class	miRNA
Genome position	Chr11:1648847-1648938 [+]
Reference genome	12X
Source	SRR1049296
Length	20
Mature sequence(if miRNA)	73 - GGUUUUGAUCAGUUAGGGUG - 92
Stem-loop(if miRNA)	--A                  C                 CAU  UC    CCUAACUGAUCAAAACCC ACUAAGACCCAAAUCAU   CA  A    |||||||||||||||||| |||||||||||||||||   ||  U    GGAUUGACUAGUUUUGGG UGAUUCUGGGUUUAGUA   GU  C GUG                  U                 -AU  UA
Stem-loop sequence	ACCUAACUGAUCAAAACCCCACUAAGACCCAAAUCAUCAUCAUCAUCAUUGUAAUGAUUUGGGUCUUAGUUGGGUUUUGAUCAGUUAGGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010648668.2	ncRNA:20   GUGGGAUUGACUAGUUUUGG   1   *|||||||=||||||||||| targets:271   AACCCUAAUUGAUCAAAACC   290 Target Full Sequence	1.5	PREDICTED: Vitis vinifera vacuolar protein sorting-associated protein 28 homolog 2 (LOC100261868), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_019218446.1	ncRNA:20   GUGGGAUUGACUAGUUUUGG   1   *|||||||=||||||||||| targets:271   AACCCUAAUUGAUCAAAACC   290 Target Full Sequence	1.5	PREDICTED: Vitis vinifera vacuolar protein sorting-associated protein 28 homolog 2 (LOC100261868), transcript variant X5, mRNA	NA	coding protein	psRNATarget
FQ390704.1	ncRNA:20   GUGGGAUUGACUAGUUUUGG   1   *|||||||=||||||||||| targets:160   AACCCUAAUUGAUCAAAACC   179 Target Full Sequence	1.5	Vitis vinifera clone SS0AEB16YO23	NA	coding protein	psRNATarget
XM_002273576.4	ncRNA:20   GUGGGAUUGACUAGUUUUGG   1   *|||||||=||||||||||| targets:271   AACCCUAAUUGAUCAAAACC   290 Target Full Sequence	1.5	PREDICTED: Vitis vinifera vacuolar protein sorting-associated protein 28 homolog 2 (LOC100261868), transcript variant X3, mRNA	NA	coding protein	psRNATarget
KA172991.1	ncRNA:20   GUGGGAUUGACUAGUUUUGG   1   *|||||||=||||||||||| targets:288   AACCCUAAUUGAUCAAAACC   307 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1541_Transcript_3/10_Confidence_0.444.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA172992.1	ncRNA:20   GUGGGAUUGACUAGUUUUGG   1   *|||||||=||||||||||| targets:288   AACCCUAAUUGAUCAAAACC   307 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1541_Transcript_2/10_Confidence_0.407.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA172993.1	ncRNA:20   GUGGGAUUGACUAGUUUUGG   1   *|||||||=||||||||||| targets:288   AACCCUAAUUGAUCAAAACC   307 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1541_Transcript_7/10_Confidence_0.481.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002283990.4	ncRNA:20   GUGGGAUUGACUAGUUUUGG   1   *|||||**|||||||||||| targets:75   AACCCUCUCUGAUCAAAACC   94 Target Full Sequence	2.5	PREDICTED: Vitis vinifera glycine-rich RNA-binding protein blt801 (LOC100256940), mRNA	NA	coding protein	psRNATarget