Search result

BaseInfo

ncRNA ID	novel_vvi_miR72
Species	Vitis vinifera
Class	miRNA
Genome position	Chr7:16433529-16433672 [-]
Reference genome	12X
Source	SRR1049296
Length	24
Mature sequence(if miRNA)	1 - CUAGCGCAGAUGGUACCAGGAGGG - 24
Stem-loop(if miRNA)	--                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN   CUCCUGGUACCAUCUGCGCU                                                  N   ||||||||||||||||||||   GAGGACCAUGGUAGACGCGA                                                  N GG                    UCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Stem-loop sequence	CUCCUGGUACCAUCUGCGCUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCUAGCGCAGAUGGUACCAGGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA172131.1	ncRNA:24   GGGAGGACCAUGGUAGACGCGAUC   1   ||||||||||||||||||*||||| targets:385   CCCUCCUGGUACCAUCUGAGCUAG   408 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_19677_Transcript_4/5_Confidence_0.826.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002270850.4	ncRNA:24   GGGAGGACCAUGGUAGACGCGAUC   1   ||||||||*|||||||||=||||| targets:826   CCCUCCUGAUACCAUCUGUGCUAG   849 Target Full Sequence	2.5	PREDICTED: Vitis vinifera receptor-like cytosolic serine/threonine-protein kinase RBK2 (LOC100240843), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA140866.1	ncRNA:24   GGGAGGACCAUGGUAGACGCGAUC   1   ||||||||||||||||||*||||* targets:2115   CCCUCCUGGUACCAUCUGGGCUAU   2138 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_10445_Transcript_8/9_Confidence_0.621.Vivi mRNA sequence	NA	coding protein	psRNATarget