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BaseInfo

ncRNA ID novel_vvi_miR61
Species Vitis vinifera
Class miRNA
Genome position Chr6:12628967-12629053 [-]
Reference genome 12X
Source SRR1049296;SRR1049373;SRR1528391;SRR1049291;SRR1049295
Length 24
Mature sequence(if miRNA) 64 - AACGUGUCUACAUGGUUAAUAGGA - 87
Stem-loop(if miRNA) --            U      U    GCC    G       AU
  AACGUGUCUACA GGUUAA AGGA   UAUA AUAUAUA  G
  |||||||||||| |||||| ||||   |||| |||||||  U
  UUGCAUAGAUGU UCAAUU UCCU   GUAU UAUAUAU  U
UU            U      U    AAA    G       CA
Stem-loop sequence AACGUGUCUACAUGGUUAAUAGGAGCCUAUAGAUAUAUAAUGUUACUAUAUAUGUAUGAAAUCCUUUUAACUUUGUAGAUACGUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010659179.2
ncRNA:24   AGGAUAAUUGGUACAUCUGUGCAA   1
  ||||*||||=||||||||||||||
targets:1305   UCCUUUUAAUCAUGUAGACACGUU   1328

1.0 PREDICTED: Vitis vinifera 7-methylxanthosine synthase 1-like (LOC104880927), mRNA NA coding protein psRNATarget
KA140134.1
ncRNA:24   AGGAUAAUUGGUACAUCUGUGCAA   1
  ||||*||||=||||||||||||||
targets:1216   UCCUUUUAAUCAUGUAGACACGUU   1239

1.0 TSA: Vitis vinifera Locus_11074_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence NA coding protein psRNATarget
KA135579.1
ncRNA:24   AGGAUAAUUGGUACAUCUGUGCAA   1
  |=||*||||||||||||||||*||
targets:2428   UUCUUUUAACCAUGUAGACACAUU   2451

1.5 TSA: Vitis vinifera Locus_5999_Transcript_7/9_Confidence_0.400.Vivi mRNA sequence NA coding protein psRNATarget
KA140671.1
ncRNA:24   AGGAUAAUUGGUACAUCUGUGCAA   1
  ||||*|**||||||||||||||||
targets:1011   UCCUCUCUACCAUGUAGACACGUU   1034

2.0 TSA: Vitis vinifera Locus_2368_Transcript_8/13_Confidence_0.236.Vivi mRNA sequence NA coding protein psRNATarget
KA133944.1
ncRNA:24   AGGAUAAUUGGUACAUCUGUGCAA   1
  ||||*|||||=||||||||||*||
targets:2581   UCCUUUUAACUAUGUAGACACAUU   2604

2.5 TSA: Vitis vinifera Locus_9579_Transcript_3/5_Confidence_0.583.Vivi mRNA sequence NA coding protein psRNATarget
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