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BaseInfo

ncRNA ID	novel_vvi_miR55
Species	Vitis vinifera
Class	miRNA
Genome position	Chr5:65257-65353 [+]
Reference genome	12X
Source	SRR1049296;SRR1528376;SRR1528384;SRR1528391;SRR1528403
Length	22
Mature sequence(if miRNA)	76 - UUAGAUUCACGCACAAACUCGU - 97
Stem-loop(if miRNA)	--A                A   C  A   U GC     --------A    U    AGUUUGUGCGUGAAUC AAC CC UCG A  CGUCC         UAUC U    |||||||||||||||| ||| || ||| |  |||||         ||||    UCAAACACGCACUUAG UUG GG AGC U  GCGGG         AUGG C UGC                A   C  C   - UA     GCACUAAUC    G
Stem-loop sequence	AAGUUUGUGCGUGAAUCAAACCCCAUCGUAGCCGUCCAUAUCUUCGGGUACUAAUCACGGGGCGAUUCGACGGCGUUAGAUUCACGCACAAACUCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002274113.3	ncRNA:22   UGCUCAAACACGCACUUAGAUU   1   |*|||||||||||||||||||| targets:3072   AGGAGUUUGUGCGUGAAUCUAA   3093 Target Full Sequence	0.0	PREDICTED: Vitis vinifera protein argonaute 2 (LOC100251084), mRNA	NA	coding protein	psRNATarget
XM_019222724.1	ncRNA:22   UGCUCAAACACGCACUUAGAUU   1   |*|||||||||||||||||||| targets:3350   AGGAGUUUGUGCGUGAAUCUAA   3371 Target Full Sequence	0.0	PREDICTED: Vitis vinifera protein argonaute 2 (LOC100249360), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_003633012.3	ncRNA:22   UGCUCAAACACGCACUUAGAUU   1   |*|||||||||||||||||||| targets:3352   AGGAGUUUGUGCGUGAAUCUAA   3373 Target Full Sequence	0.0	PREDICTED: Vitis vinifera protein argonaute 2 (LOC100249360), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019222723.1	ncRNA:22   UGCUCAAACACGCACUUAGAUU   1   |*|||||||||||||||||||| targets:3392   AGGAGUUUGUGCGUGAAUCUAA   3413 Target Full Sequence	0.0	PREDICTED: Vitis vinifera protein argonaute 2 (LOC100249360), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA137057.1	ncRNA:22   UGCUCAAACACGCACUUAGAUU   1   |*|||||||||||||||||||| targets:3630   AGGAGUUUGUGCGUGAAUCUAA   3651 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_7939_Transcript_8/10_Confidence_0.508.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010657626.2	ncRNA:22   UGCUCAAACACGCACUUAGAUU   1   **|||||||||||||||||||| targets:3495   UGGAGUUUGUGCGUGAAUCUAA   3516 Target Full Sequence	0.0	PREDICTED: Vitis vinifera protein argonaute 2 (LOC100240850), mRNA	NA	coding protein	psRNATarget
KA137059.1	ncRNA:22   UGCU-CAAACACGCACUUAGAUU   1   |=|=-|||||||||||||||||| targets:3444   AUGGUGUUUGUGCGUGAAUCUAA   3466 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_4653_Transcript_5/5_Confidence_0.583.Vivi mRNA sequence	NA	coding protein	psRNATarget