| ncRNA ID | novel_vvi_miR54 |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | Chr5:5845396-5845465 [+] |
| Reference genome | 12X |
| Source | SRR1049296;SRR1528350;SRR1528355;SRR1528357;SRR1528358;SRR1528359;SRR1528369;SRR1528370;SRR1528374;SRR1528375;SRR1528376;SRR1048201;SRR1048206;SRR1528380;SRR1528381;SRR1528383;SRR1048208;SRR1528385;SRR1528391;SRR1528394;SRR1528396;SRR1049289;SRR1528408;SRR1528411;SRR1528415;SRR1528416;SRR1528417;SRR2029784;SRR890731;SRR1049295 |
| Length | 21 |
| Mature sequence(if miRNA) | 1 - UGAAGCUGCCAGCAUGAUCUA - 21 |
| Stem-loop(if miRNA) |
-- G AAACUUGCUUCC U UGAAGCUGCCA CAUGAUCU CUUUG G ||||||||||| |||||||| ||||| ACUUUGACGGU GUACUAGA GAGAC A CC - ---------CUA A |
| Stem-loop sequence | UGAAGCUGCCAGCAUGAUCUAAACUUGCUUCCCUUUGUGAACAGAGAUCAGAUCAUGUGGCAGUUUCACC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA173445.1 |
|
0.0 | TSA: Vitis vinifera Locus_24147_Transcript_2/2_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA173444.1 |
|
0.0 | TSA: Vitis vinifera Locus_24147_Transcript_1/2_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget |