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BaseInfo

ncRNA ID	novel_vvi_miR44
Species	Vitis vinifera
Class	miRNA
Genome position	Chr4:7696586-7696798 [+]
Reference genome	12X
Source	SRR1049296
Length	21
Mature sequence(if miRNA)	1 - CAAGGUUCACUAAGGUAGUAC - 21
Stem-loop(if miRNA)	--                             G AACAUCUAAU   UG     G AA    AAAA   AAUAGAAAACA     -   GCUCAAAUC     U    A    C   CAAGGUUCACUAAGGUAGUACCUAAGGUU A          ACU  AGGUU G  AGGG    ACC           AAUGU CAU         UGCCU AGGU UUAC A   ||||||||||||||||||||||||||||| |          |||  ||||| |  ||||    |||           ||||| |||         ||||| |||| ||||   GUUCCAAGUGAUUCCAUCGUGGGUUCCAA U          UGG  UCCAA U  UUCC    UGG           UUACA GUG         AUGGG UCCA AGUG U AG                             G GAUUCCAUCC   GU     G GA    AUCC   ----------G     A   -AUUCCAUC     U    -    A
Stem-loop sequence	CAAGGUUCACUAAGGUAGUACCUAAGGUUGAAACAUCUAAUACUUGAGGUUGGAAAGGGAAAAACCAAUAGAAAACAAAUGUCAUGCUCAAAUCUGCCUUAGGUAUUACCAUAGUGAACCUUGGGUACUACCUUAGUGAACAUUGGGUCCUACCUUAGUGAACCUUGGGUCCUACCUUAGUGAACCUUGGGUGCUACCUUAGUGAACCUUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA150086.1	ncRNA:19   UGAUGGAAUCACUUGGAAC   1   ||||||||||||||||||| targets:1   ACUACCUUAGUGAACCUUG   19 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_6575_Transcript_8/8_Confidence_0.350.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA150087.1	ncRNA:19   UGAUGGAAUCACUUGGAAC   1   ||||||||||||||||||| targets:1   ACUACCUUAGUGAACCUUG   19 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_6575_Transcript_3/8_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA150086.1	ncRNA:21   CAUGAUGGAAUCACUUGGAAC   1   |||||||||||||||*||||* targets:43   GUACUACCUUAGUGACCCUUA   63 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_6575_Transcript_8/8_Confidence_0.350.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA150087.1	ncRNA:21   CAUGAUGGAAUCACUUGGAAC   1   |||||||||||||||*||||* targets:43   GUACUACCUUAGUGACCCUUA   63 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_6575_Transcript_3/8_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget