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BaseInfo

ncRNA ID novel_vvi_miR38
Species Vitis vinifera
Class miRNA
Genome position Chr4:13349317-13349488 [-]
Reference genome 12X
Source SRR1049296
Length 24
Mature sequence(if miRNA) 149 - AGAGACACUUUUAGUAUAAAUCCA - 172
Stem-loop(if miRNA) --            AG     A   --  UU     GAAU             U            U    AG    -UA   G     
  AGAGACACUUUU  UAUAA UCC  AA  UUUUG    UGUAGAAGGUGUC CUUGAAGAGACA CUUU  UAUA   UUG AAUUUG
  ||||||||||||  ||||| |||  ||  |||||    ||||||||||||| |||||||||||| ||||  ||||   ||| |||||U
  UCUCUGUGGAAG  AUGUU AGG  UU  AAAAU    AUAUUUUCUACAG GAACUUCUCUGU GAAA  GUGU   GGU UUAAGG
CU            --     A   AU  UU     AAAU             U            -    -G    UAA   G     
Stem-loop sequence AGAGACACUUUUAGUAUAAAUCCAAUUUUUUGGAAUUGUAGAAGGUGUCUCUUGAAGAGACAUCUUUAGUAUAUAUUGGAAUUUGUGGAAUUGUGGAAUUGUGGAAAGUGUCUCUUCAAGUGACAUCUUUUAUAUAAAUAAAAUUUUUAGGAAUUGUAGAAGGUGUCUCUUC