| ncRNA ID | novel_vvi_miR28 |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | Chr2:2147142-2147357 [-] |
| Reference genome | 12X |
| Source | SRR1049296;SRR1048207;SRR1048208;SRR1049294;SRR1048203 |
| Length | 24 |
| Mature sequence(if miRNA) | 1 - AGGGCUAUUUUGGAUAUAAGUUUG - 24 |
| Stem-loop(if miRNA) |
-- UUC U A -- AUG UAA A UUUA A A A -----AA C U G UA UAAU AACUUAUAUUCA UAG CCCUUU UGU CC UGGA CAUG UG UUAUU UUAUU UU UUUCAA GAAAC ACAU UU AAAAUG GUUUCA U |||||||||||| ||| |||||| ||| || |||| |||| || ||||| ||||| || |||||| ||||| |||| || |||||| |||||| UUGAAUAUAGGU AUC GGGAAA ACA GG GCCU GUAC AC AAUAA AAUAA AA AAAGUU CUUUG UGUA AA UUUUAC CAAAGU U GU UUU - - AC --A -CA - -UAA - - A AAUACAA C C G GC CACG |
| Stem-loop sequence | AACUUAUAUUCAUUCUAGUCCCUUUAUGUCCAUGUGGAUAACAUGAUGUUUAUUAUUAUUAUUAUUAUUUCAAAAGAAACCACAUUUUGAAAAUGUAGUUUCAUAAUUUGCACUGAAACCGCAUUUUGAACAUGUCGUUUCAACAUAAUUGAAAAAAAAUAAAAUAAAAUCACAUGACUCCGAGGCAACAAAAGGGCUAUUUUGGAUAUAAGUUUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA142908.1 |
|
2.0 | TSA: Vitis vinifera Locus_11248_Transcript_4/5_Confidence_0.750.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_002267697.3 |
|
2.5 | PREDICTED: Vitis vinifera probable glutathione S-transferase (LOC100243021), mRNA | NA | coding protein | psRNATarget |