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BaseInfo

ncRNA ID	novel_vvi_miR27
Species	Vitis vinifera
Class	miRNA
Genome position	Chr2:3637085-3637190 [-]
Reference genome	12X
Source	SRR1049296;SRR1049370;SRR1049371;SRR1049372;SRR1049373;SRR1528356;SRR1528357;SRR1048204;SRR1528361;SRR1528365;SRR1048205;SRR1528374;SRR1528375;SRR1528377;SRR1528380;SRR1528381;SRR1528383;SRR1049289;SRR1049290;SRR1528410;SRR1049291;SRR1049294
Length	24
Mature sequence(if miRNA)	1 - AGAAACACUUCCUAGAAUCACUGC - 24
Stem-loop(if miRNA)	--           U  AC         U            G   ---      A   GGUGAUUCUAG AA  GUUUCUAAC UUUCUAGCACUU AAA   AUUUUU U   ||||||||||| ||  ||||||||| |||||||||||| |||   |||||| C   UCACUAAGAUC UU  CAAAGAUUG AAAGAUUGUGAA UUU   UAAGAA A CG           C  CA         U            G   CGU      A
Stem-loop sequence	GGUGAUUCUAGUAAACGUUUCUAACUUUUCUAGCACUUGAAAAUUUUUAUCAAAAGAAUUGCUUUGAAGUGUUAGAAAUGUUAGAAACACUUCCUAGAAUCACUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA166769.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   *=|||||*|||||||||||||||| targets:4593   AUAGUGAAUCUAGGAAGUGUUUCU   4616 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_5976_Transcript_9/10_Confidence_0.484.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165748.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |||||||||=||||||||||||=| targets:1694   GCAGUGAUUUUAGGAAGUGUUUUU   1717 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1543_Transcript_6/7_Confidence_0.611.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170094.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |=|||||||=||||||||||||=| targets:4082   GUAGUGAUUUUAGGAAGUGUUUUU   4105 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1667_Transcript_4/5_Confidence_0.583.Vivi mRNA sequence	NA	coding protein	psRNATarget
FQ381116.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |||||||||=||||||||*||||| targets:1251   GCAGUGAUUUUAGGAAGUAUUUCU   1274 Target Full Sequence	2.5	Vitis vinifera clone SS0ACG1YF21	NA	coding protein	psRNATarget
KA144717.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |||||||||=||||||||*||||| targets:1302   GCAGUGAUUUUAGGAAGUAUUUCU   1325 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_1426_Transcript_1/6_Confidence_0.556.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170970.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |=|||||||=|||*|||||||||| targets:162   GUAGUGAUUUUAGAAAGUGUUUCU   185 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_17927_Transcript_6/6_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165408.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |=|||||||=||*||||||||||| targets:2996   GUAGUGAUUUUAAGAAGUGUUUCU   3019 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_14018_Transcript_1/3_Confidence_0.714.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165409.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |=|||||||=||*||||||||||| targets:3085   GUAGUGAUUUUAAGAAGUGUUUCU   3108 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_14018_Transcript_2/3_Confidence_0.714.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170969.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |=|||||||=|||*|||||||||| targets:162   GUAGUGAUUUUAGAAAGUGUUUCU   185 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_17927_Transcript_3/6_Confidence_0.611.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA154839.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |=|||||||=||*||||||||||| targets:2779   GUAGUGAUUUUAAGAAGUGUUUCU   2802 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_4953_Transcript_6/7_Confidence_0.478.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159796.1	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   *||||||||=||||||||||||*| targets:2592   ACAGUGAUUUUAGGAAGUGUUUAU   2615 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3174_Transcript_7/8_Confidence_0.565.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA153142.1	ncRNA:24   CGU--CACUAAGAUCCUUCACAAAGA   1   *||--||||||=||||||||||||=| targets:88   UCACCGUGAUUUUAGGAAGUGUUUUU   113 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_44328_Transcript_3/3_Confidence_0.714.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002270170.3	ncRNA:24   CGUCACUAAGAUCCUUCACAAAGA   1   |=|||||||*|*|||||||||||| targets:3935   GUAGUGAUUAUCGGAAGUGUUUCU   3958 Target Full Sequence	2.5	PREDICTED: Vitis vinifera WD repeat-containing protein 44 (LOC100264924), mRNA	NA	coding protein	psRNATarget