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BaseInfo

ncRNA ID	novel_vvi_miR20
Species	Vitis vinifera
Class	miRNA
Genome position	Chr19:9338894-9339106 [+]
Reference genome	12X
Source	SRR1049296;SRR1048205;SRR1049290
Length	24
Mature sequence(if miRNA)	190 - CUAUUCAGCCAAAAAACAAACACU - 213
Stem-loop(if miRNA)	--                           AU                       C  UC    G              C                U     A   U   UGUUUGUUUUUUGGCUGAAUAGAAAAA  CAAAAUAUUUGGCUUUUUCUAUU AG  AAAA UAACUUGUUAAUAU AUUUAACAUAACUAAA UGAAC UAU G   |||||||||||||||||||||||||||  ||||||||||||||||||||||| ||  |||| |||||||||||||| |||||||||||||||| ||||| ||| A   ACAAACAAAAAACCGACUUAUCUUUUU  GUUUUAUAAAUCGAAAAAGAUAA UC  UUUU AUUGGACAAUUGUA UAGGUUGUAUUGAUUU ACUUG AUA U UC                           CG                       A  GA    G              U                C     A   A
Stem-loop sequence	UGUUUGUUUUUUGGCUGAAUAGAAAAAAUCAAAAUAUUUGGCUUUUUCUAUUCAGUCAAAAGUAACUUGUUAAUAUCAUUUAACAUAACUAAAUUGAACAUAUUGAUAAUAAGUUCACUUUAGUUAUGUUGGAUUAUGUUAACAGGUUAGUUUUAGCUAAAUAGAAAAAGCUAAAUAUUUUGGCUUUUUCUAUUCAGCCAAAAAACAAACACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA167155.1	ncRNA:24   UCACAAACAAAAAACCGACUUAUC   1   =|||||||||||||||=||||||| targets:3627   GGUGUUUGUUUUUUGGUUGAAUAG   3650 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167153.1	ncRNA:24   UCACAAACAAAAAACCGACUUAUC   1   =|||||||||||||||=||||||| targets:3409   GGUGUUUGUUUUUUGGUUGAAUAG   3432 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019224211.1	ncRNA:24   UCACAAACAAAAAACCGACUUAUC   1   =|||||||||||||||*||||||| targets:6928   GGUGUUUGUUUUUUGGAUGAAUAG   6951 Target Full Sequence	1.5	PREDICTED: Vitis vinifera uncharacterized LOC100263302 (LOC100263302), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:24   UCACAAACAAAAAACCGACUUAUC   1   =||||||||||||||*|||||||| targets:1838   GGUGUUUGUUUUUUGACUGAAUAG   1861 Target Full Sequence	1.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
KA142774.1	ncRNA:24   UCACAAACAAAAAACCGACUUAUC   1   |*||||||||||||||=||||||| targets:1329   AAUGUUUGUUUUUUGGUUGAAUAG   1352 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142775.1	ncRNA:24   UCACAAACAAAAAACCGACUUAUC   1   |*||||||||||||||=||||||| targets:1229   AAUGUUUGUUUUUUGGUUGAAUAG   1252 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159067.1	ncRNA:24   UCACAAACAAAAAACCGACUUAUC   1   *||*||||||||||||=||||||| targets:1282   CGUAUUUGUUUUUUGGUUGAAUAG   1305 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA172889.1	ncRNA:24   UCACAAACAAAAAACCGACUUAUC   1   =|*|||||||||||||||*||||| targets:3789   GGCGUUUGUUUUUUGGCUAAAUAG   3812 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002275193.3	ncRNA:24   UCACAAACAAAAAACCGACUUAUC   1   ****|||*|||||||||||||||* targets:1252   UUAUUUUUUUUUUUGGCUGAAUAA   1275 Target Full Sequence	2.0	PREDICTED: Vitis vinifera sphinganine C4-monooxygenase 1 (LOC100253403), mRNA	NA	coding protein	psRNATarget