ncRNA ID | novel_vvi_miR17 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr19:12981784-12981833 [-] |
Reference genome | 12X |
Source | SRR1049296 |
Length | 25 |
Mature sequence(if miRNA) | 26 - AGACACCUUUAAUAUAAAUCCAAUU - 50 |
Stem-loop(if miRNA) |
--          AA     A    AU   AGACACCUUU  UAUAA UCCA  U   ||||||||||  ||||| ||||   UCUGUGGAAG  AUGUU GGGU  U UC          --     A    CU |
Stem-loop sequence | AGACACCUUUAAUAUAAAUCCAAUUUUCUGGGAUUGUAGAAGGUGUCUCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA145589.1 |
|
1.5 | TSA: Vitis vinifera Locus_1679_Transcript_9/9_Confidence_0.619.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA171304.1 |
|
3.0 | TSA: Vitis vinifera Locus_10500_Transcript_8/10_Confidence_0.261.Vivi mRNA sequence | NA | coding protein | psRNATarget |