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BaseInfo

ncRNA ID novel_vvi_miR17
Species Vitis vinifera
Class miRNA
Genome position Chr19:12981784-12981833 [-]
Reference genome 12X
Source SRR1049296
Length 25
Mature sequence(if miRNA) 26 - AGACACCUUUAAUAUAAAUCCAAUU - 50
Stem-loop(if miRNA) --          AA     A    AU
  AGACACCUUU  UAUAA UCCA  U
  ||||||||||  ||||| ||||
  UCUGUGGAAG  AUGUU GGGU  U
UC          --     A    CU
Stem-loop sequence AGACACCUUUAAUAUAAAUCCAAUUUUCUGGGAUUGUAGAAGGUGUCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA145589.1
ncRNA:25   UUA-ACCUAAAUAUAAUUUCCACAGA   1
  =||-||*|||||||*|||||||||||
targets:906   GAUCUGAAUUUAUAAUAAAGGUGUCU   931

1.5 TSA: Vitis vinifera Locus_1679_Transcript_9/9_Confidence_0.619.Vivi mRNA sequence NA coding protein psRNATarget
KA171304.1
ncRNA:25   UUAACCUAAAUAUAAUUUCCACAGA   1
  =|||*||||*|*||||||||||||*
targets:1241   GAUUUGAUUCAAAUUAAAGGUGUCA   1265

3.0 TSA: Vitis vinifera Locus_10500_Transcript_8/10_Confidence_0.261.Vivi mRNA sequence NA coding protein psRNATarget