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BaseInfo

ncRNA ID novel_vvi_miR9
Species Vitis vinifera
Class miRNA
Genome position Chr18:4890594-4890645 [-]
Reference genome 12X
Source SRR1049296
Length 24
Mature sequence(if miRNA) 29 - AUCACUUAUCAUAUCCUAUGUUCA - 52
Stem-loop(if miRNA) --          A   CC     UCA
  AUCACUUAUC UAU  UAUGU   A
  |||||||||| |||  |||||
  UAGUGAAUAG AUA  GUACA   C
GA          G   AA     CAC
Stem-loop sequence AUCACUUAUCAUAUCCUAUGUUCAACCACACAUGAAAUAGGAUAAGUGAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA135093.1
ncRNA:24   ACUUGUAUCCUAUACUAUUCACUA   1
  ||||=|||*||||||||||||*||
targets:92   UGAAUAUAAGAUAUGAUAAGUAAU   115

2.5 TSA: Vitis vinifera Locus_10553_Transcript_1/3_Confidence_0.500.Vivi mRNA sequence NA coding protein psRNATarget
KA135094.1
ncRNA:24   ACUUGUAUCCUAUACUAUUCACUA   1
  ||||=|||*||||||||||||*||
targets:92   UGAAUAUAAGAUAUGAUAAGUAAU   115

2.5 TSA: Vitis vinifera Locus_10553_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence NA coding protein psRNATarget