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BaseInfo

ncRNA ID novel_vvi_miR4
Species Vitis vinifera
Class miRNA
Genome position Chr17:1873834-1874025 [-]
Reference genome 12X
Source SRR1049296;SRR1049371;SRR1528364;SRR1528371;SRR1528380;SRR1528388;SRR1528392;SRR1528406;SRR1049294;SRR1049295
Length 24
Mature sequence(if miRNA) 169 - AGAGACCACCUAGUCCUGUUAAGA - 192
Stem-loop(if miRNA) --            G           C        A        GC  -                 -     AAGUUCU   U     --U    CAACCAU
  AGAGACCACCUA UCCUGUUAAGA CAAGUUUA GGGCCUAA  UC GAGAGGGGCUUAGGUUU GGGGG       UUA GGAAU   GCCU       U
  |||||||||||| ||||||||||| |||||||| ||||||||  || ||||||||||||||||| |||||       ||| |||||   ||||
  UUUCUGGUGGGU AGGACAAUUCU GUUCAAAU UCUGGAUU  AG UUCUCCCCGAAUCCAAA CCCUC       AAU CCUUA   UGGA       U
CC            G           A        A        -A  A                 A     -------   C     UUU    AUAACCU
Stem-loop sequence AGAGACCACCUAGUCCUGUUAAGACCAAGUUUAAGGGCCUAAGCUCGAGAGGGGCUUAGGUUUGGGGGAAGUUCUUUAUGGAAUUGCCUCAACCAUUUUCCAAUAAGGUUUUAUUCCCUAACUCCCAAAACCUAAGCCCCUCUUAGAAUUAGGUCUAUAAACUUGAUCUUAACAGGAGUGGGUGGUCUUUCC