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BaseInfo

ncRNA ID novel_vvi_miR3
Species Vitis vinifera
Class miRNA
Genome position Chr4:6524880-6524940 [+]
Reference genome 12X
Source SRR1048203;SRR1049373;SRR1528358;SRR1528371;SRR1049289;SRR1528397;SRR2029783;SRR2029784;SRR1049293
Length 21
Mature sequence(if miRNA) 41 - AUUAAUUGUUCCCACCGCUCU - 61
Stem-loop(if miRNA) --AA  A                     UA
    CG UGGGAAUAAUUAAUAUAAUUU  A
    || |||||||||||||||||||||  A
    GC ACCCUUGUUAAUUAUAUUAAA  A
UCUC  C                     UU
Stem-loop sequence AACGAUGGGAAUAAUUAAUAUAAUUUUAAAAUUAAAUUAUAUUAAUUGUUCCCACCGCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019225492.1
ncRNA:21   UCUCGCCACCCUUGUUAAUUA   1
  =||||||||||||||||||||
targets:1827   GGAGCGGUGGGAACAAUUAAU   1847

0.0 PREDICTED: Vitis vinifera probable alkaline/neutral invertase F (LOC100262104), transcript variant X2, mRNA NA coding protein psRNATarget
XM_002264250.2
ncRNA:21   UCUCGCCACCCUUGUUAAUUA   1
  =||||||||||||||||||||
targets:1916   GGAGCGGUGGGAACAAUUAAU   1936

0.0 PREDICTED: Vitis vinifera probable alkaline/neutral invertase F (LOC100262104), transcript variant X1, mRNA NA coding protein psRNATarget