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BaseInfo

ncRNA ID	novel_vvi_miR2
Species	Vitis vinifera
Class	miRNA
Genome position	Chr1:5949811-5949900 [-]
Reference genome	12X
Source	SRR1048201
Length	21
Mature sequence(if miRNA)	70 - UGCGUUUGGUAGUGAUUCUGA - 90
Stem-loop(if miRNA)	--  C     GU       C  A   C A        C    UAA   UG GUUUG  AGUGAUU UG GAA U UUUUUAGU UUUU   U   || |||||  ||||||| || ||| | |||||||| ||||   AC CAAAC  UCACUAA AC CUU A AAAAAUCG AAAG   A UC  A     UG       U  C   C C        U    UUC
Stem-loop sequence	UGCGUUUGGUAGUGAUUCUGAGAACUAUUUUUAGUCUUUUUAAUACUUGAAAUGCUAAAAACACUUCCCAUAAUCACUGUCAAACACACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA154111.1	ncRNA:21   AGUCUUAGUGAUGGUUUGCGU   1   *=||||*|||||||||||||| targets:2813   GUAGAAACACUACCAAACGCA   2833 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_2094_Transcript_1/7_Confidence_0.739.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA154112.1	ncRNA:21   AGUCUUAGUGAUGGUUUGCGU   1   *=||||*|||||||||||||| targets:2922   GUAGAAACACUACCAAACGCA   2942 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_2094_Transcript_6/7_Confidence_0.739.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA165748.1	ncRNA:21   AGUCUUAGUGAUGGUUUGCGU   1   |=||||||||||||=|||||| targets:1778   UUAGAAUCACUACCGAACGCA   1798 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_1543_Transcript_6/7_Confidence_0.611.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA135132.1	ncRNA:21   AGUCUUAGUGAUGGUUUGCGU   1   |=|*|||||||||||||=||| targets:1457   UUAUAAUCACUACCAAAUGCA   1477 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_13541_Transcript_5/6_Confidence_0.722.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010654642.2	ncRNA:21   AGUCUUAGUGAUGGUUUGCGU   1   *=|||||||||||||||||*= targets:2101   CUAGAAUCACUACCAAACGGG   2121 Target Full Sequence	2.5	PREDICTED: Vitis vinifera alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial (LOC100264660), mRNA	NA	coding protein	psRNATarget
XM_002271269.3	ncRNA:21   AGUCUUAGUGAUGGUUUGCGU   1   *=|*|||||||*||||||||| targets:4100   AUAAAAUCACUCCCAAACGCA   4120 Target Full Sequence	2.5	PREDICTED: Vitis vinifera ABC transporter B family member 9-like (LOC100265902), mRNA	NA	coding protein	psRNATarget