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BaseInfo

ncRNA ID novel_rco_miR109
Species Ricinus communis
Class miRNA
Genome position NW_002994652.1:12395-12481 [+]
Reference genome JCVI_RCG_1.1
Source SRR1027045
Length 21
Mature sequence(if miRNA) 67 - UUGAGCCGCGUCAAUAUCUCC - 87
Stem-loop(if miRNA) --             U       U   -   GA    -AA   U
  AGGUAUUGGCGCG CUCAAUC GAU ACA  GCUA   UGG A
  ||||||||||||| ||||||| ||| |||  ||||   ||| A
  UCUAUAACUGCGC GAGUUAG UUA UGU  CGAU   AUU A
CC             C       U   A   AC    AAG   U
Stem-loop sequence AGGUAUUGGCGCGUCUCAAUCUGAUACAGAGCUAAAUGGUAAAUUUAGAAUAGCCAUGUAAUUUGAUUGAGCCGCGUCAAUAUCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002511615.2
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|=|||||||=||||||||||
targets:1719   AGGGAUAUUGGCGCGGCUCAA   1739

2.5 PREDICTED: Ricinus communis scarecrow-like protein 6 (LOC8265856), mRNA scarecrow-like protein 6(LOC8265856) coding protein psRNATarget
XM_015725220.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|=|||||||=||||||||||
targets:2149   AGGGAUAUUGGCGCGGCUCAA   2169

2.5 PREDICTED: Ricinus communis scarecrow-like protein 27 (LOC8265567), mRNA scarecrow-like protein 27(LOC8265567) coding protein psRNATarget