Search result

BaseInfo

ncRNA ID	novel_rco_miR83
Species	Ricinus communis
Class	miRNA
Genome position	NW_002994319.1:804995-805119 [-]
Reference genome	JCVI_RCG_1.1
Source	SRR1027044
Length	24
Mature sequence(if miRNA)	1 - UUGAAGUUCUUGAACAGUAGGAAG - 24
Stem-loop(if miRNA)	--  A   UU     UG      ------   CU UG    ----        -A   UUUUG   UUU   UC CUA  CUGUU  AGGAUU      AGA  U  GAGC    AAAACAGA  UCA     UUG   U   || |||  |||||  ||||||      |||  |  ||||    ||||||||  |||     |||   U   AG GAU  GACAA  UCUUGA      UCU  A  UUCG    UUUUGUCU  AGU     AAC   C GA  -   --     GU      AGUUUU   UU GU    AUAG        CG   UUCUA   UUU
Stem-loop sequence	UCACUAUUCUGUUUGAGGAUUAGACUUUGGAGCAAAACAGAAUCAUUUUGUUGUUUUUCUUUCAAAUCUUUGAGCUCUGUUUUGAUAGCUUUGAUUUCUUUUUGAAGUUCUUGAACAGUAGGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002528996.2	ncRNA:24   GAAGGAUGACAAGUUCUUGAAGUU   1   =||==|*=|*|||||||||||||| targets:248   UUUUUUUUUCUUCAAGAACUUCAA   271 Target Full Sequence	3.0	PREDICTED: Ricinus communis uncharacterized LOC8277573 (LOC8277573), transcript variant X1, mRNA	uncharacterized LOC8277573(LOC8277573)	coding protein	psRNATarget
XM_015725302.1	ncRNA:24   GAAGGAUGACAAGUUCUUGAAGUU   1   =||==|*=|*|||||||||||||| targets:248   UUUUUUUUUCUUCAAGAACUUCAA   271 Target Full Sequence	3.0	PREDICTED: Ricinus communis uncharacterized LOC8277573 (LOC8277573), transcript variant X4, mRNA	uncharacterized LOC8277573(LOC8277573)	coding protein	psRNATarget
XM_015725301.1	ncRNA:24   GAAGGAUGACAAGUUCUUGAAGUU   1   =||==|*=|*|||||||||||||| targets:248   UUUUUUUUUCUUCAAGAACUUCAA   271 Target Full Sequence	3.0	PREDICTED: Ricinus communis uncharacterized LOC8277573 (LOC8277573), transcript variant X3, mRNA	uncharacterized LOC8277573(LOC8277573)	coding protein	psRNATarget