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BaseInfo

ncRNA ID novel_rco_miR73
Species Ricinus communis
Class miRNA
Genome position NW_002994725.1:175568-175668 [+]
Reference genome JCVI_RCG_1.1
Source SRR1027044
Length 21
Mature sequence(if miRNA) 81 - UGAUUGAGCCGUGCCAAUAUC - 101
Stem-loop(if miRNA) --       C       C     -    ---A   CUAU    UC  CU  U
  UAUUGGC UGGUUCA UCAGA CAUG    AAC    CCCU  UC  GC U
  ||||||| ||||||| ||||| ||||    |||    ||||  ||  || A
  AUAACCG GCCGAGU AGUUU GUAU    UUG    GGGA  AG  CG U
CU       U       U     U    AUCG   UUGU    UA  UC  U
Stem-loop sequence UAUUGGCCUGGUUCACUCAGACAUGAAACCUAUCCCUUCUCCUGCUUAUUGCCUGAAUAGGGUGUUGUUGCUAUAUGUUUUGAUUGAGCCGUGCCAAUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002511615.2
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  |||||||||=|||||||||||
targets:1722   GAUAUUGGCGCGGCUCAAUCA   1742

1.5 PREDICTED: Ricinus communis scarecrow-like protein 6 (LOC8265856), mRNA scarecrow-like protein 6(LOC8265856) coding protein psRNATarget
XM_015725220.1
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  |||||||||=|||||||||||
targets:2152   GAUAUUGGCGCGGCUCAAUCA   2172

1.5 PREDICTED: Ricinus communis scarecrow-like protein 27 (LOC8265567), mRNA scarecrow-like protein 27(LOC8265567) coding protein psRNATarget