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BaseInfo

ncRNA ID novel_rco_miR71
Species Ricinus communis
Class miRNA
Genome position NW_002994664.1:58748-58811 [+]
Reference genome JCVI_RCG_1.1
Source SRR1027044;SRR1027045
Length 21
Mature sequence(if miRNA) 1 - UAAUCUGCAUCCUGAGGUUUA - 21
Stem-loop(if miRNA) --         U       U        -  G
  UAAUCUGCA CCUGAGG UUAGAUUG CC U
  ||||||||| ||||||| |||||||| || U
  AUUAGACGU GGGCUCC GAUCUAGU GG U
CC         U       C        A  G
Stem-loop sequence UAAUCUGCAUCCUGAGGUUUAGAUUGCCGUUUGGGAUGAUCUAGCCCUCGGGUUGCAGAUUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015722525.1
ncRNA:21   AU-UUGGAGUCCUACGUCUAAU   1
  ||-|||||||||||||||||||
targets:416   UACAACCUCAGGAUGCAGAUUA   437

2.0 PREDICTED: Ricinus communis F-box/kelch-repeat protein At3g27150 (LOC8271461), transcript variant X2, mRNA F-box/kelch-repeat protein At3g27150(LOC8271461) coding protein psRNATarget
XM_002509480.2
ncRNA:21   AU-UUGGAGUCCUACGUCUAAU   1
  ||-|||||||||||||||||||
targets:810   UACAACCUCAGGAUGCAGAUUA   831

2.0 PREDICTED: Ricinus communis F-box/kelch-repeat protein At3g27150 (LOC8271461), transcript variant X1, mRNA F-box/kelch-repeat protein At3g27150(LOC8271461) coding protein psRNATarget