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BaseInfo

ncRNA ID	novel_rco_miR64
Species	Ricinus communis
Class	miRNA
Genome position	NW_002994525.1:163476-163562 [-]
Reference genome	JCVI_RCG_1.1
Source	SRR1027044
Length	23
Mature sequence(if miRNA)	65 - UUGACAGAAGAUAGAGAGCACAA - 87
Stem-loop(if miRNA)	--           -U          --    A      C   CGA   UUGACAGAAGA  AGAGAGCACA  ACUU ACAUAC CAA   C   |||||||||||  ||||||||||  |||| |||||| |||   AACUGUCUUCU  UUUCUCGUGU  UGAA UGUAUG GUU   A UC           UU          UU    G      U   UAG
Stem-loop sequence	UUGACAGAAGAUAGAGAGCACAACUUAACAUACCCAACGACAGAUUUGUGUAUGUGAAGUUUUGUGCUCUUUUUUCUUCUGUCAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015727314.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   *||||||||||*||||||||||| targets:1060   CUGUGCUCUCUCUCUUCUGUCAA   1082 Target Full Sequence	1.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 9 (LOC8277452), mRNA	squamosa promoter-binding-like protein 9(LOC8277452)	coding protein	psRNATarget
XM_015716704.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |*|||||||||*||||||||||| targets:2000   UCGUGCUCUCUCUCUUCUGUCAA   2022 Target Full Sequence	1.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 2 (LOC8286787), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC8286787)	coding protein	psRNATarget
XM_015716703.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |*|||||||||*||||||||||| targets:2236   UCGUGCUCUCUCUCUUCUGUCAA   2258 Target Full Sequence	1.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 2 (LOC8286787), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC8286787)	coding protein	psRNATarget
XM_002509404.2	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   ***||||||||*||||||||||| targets:837   CAAUGCUCUCUCUCUUCUGUCAA   859 Target Full Sequence	1.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 3 (LOC8258445), mRNA	squamosa promoter-binding-like protein 3(LOC8258445)	coding protein	psRNATarget
XM_015729066.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |||||||||||*||||||||||= targets:1313   UUGUGCUCUCUCUCUUCUGUCAG   1335 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X3, mRNA	squamosa promoter-binding-like protein 6(LOC8264608)	coding protein	psRNATarget
XM_015729065.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |||||||||||*||||||||||= targets:1181   UUGUGCUCUCUCUCUUCUGUCAG   1203 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X2, mRNA	squamosa promoter-binding-like protein 6(LOC8264608)	coding protein	psRNATarget
XM_002512008.2	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |||||||||||*||||||||||= targets:1308   UUGUGCUCUCUCUCUUCUGUCAG   1330 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X4, mRNA	squamosa promoter-binding-like protein 6(LOC8264608)	coding protein	psRNATarget
XM_015729064.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |||||||||||*||||||||||= targets:1312   UUGUGCUCUCUCUCUUCUGUCAG   1334 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X1, mRNA	squamosa promoter-binding-like protein 6(LOC8264608)	coding protein	psRNATarget
XM_015723469.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |||||||||||*||||||||||* targets:1172   UUGUGCUCUCUCUCUUCUGUCAU   1194 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X3, mRNA	squamosa promoter-binding-like protein 13A(LOC8269206)	coding protein	psRNATarget
XM_015723461.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |||||||||||*||||||||||* targets:1297   UUGUGCUCUCUCUCUUCUGUCAU   1319 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X1, mRNA	squamosa promoter-binding-like protein 13A(LOC8269206)	coding protein	psRNATarget
XM_002511111.2	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |||||||||||*||||||||||* targets:1325   UUGUGCUCUCUCUCUUCUGUCAU   1347 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X2, mRNA	squamosa promoter-binding-like protein 13A(LOC8269206)	coding protein	psRNATarget
XM_015716677.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |*|||||||||*||||||||||* targets:1089   UGGUGCUCUCUCUCUUCUGUCAU   1111 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X2, mRNA	squamosa promoter-binding-like protein 16(LOC8286773)	coding protein	psRNATarget
XM_015716678.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |*|||||||||*||||||||||* targets:1381   UGGUGCUCUCUCUCUUCUGUCAU   1403 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X3, mRNA	squamosa promoter-binding-like protein 16(LOC8286773)	coding protein	psRNATarget
XM_015716676.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   |*|||||||||*||||||||||* targets:1390   UGGUGCUCUCUCUCUUCUGUCAU   1412 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X1, mRNA	squamosa promoter-binding-like protein 16(LOC8286773)	coding protein	psRNATarget
XM_002514579.2	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   ||*||||||||*||||||||||* targets:1837   UUCUGCUCUCUCUCUUCUGUCAU   1859 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8265059), mRNA	squamosa promoter-binding-like protein 6(LOC8265059)	coding protein	psRNATarget
XM_015727577.1	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   **|||||||||*||||||||||* targets:807   CCGUGCUCUCUCUCUUCUGUCAU   829 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 7 (LOC8265833), mRNA	squamosa promoter-binding-like protein 7(LOC8265833)	coding protein	psRNATarget
XM_002517836.2	ncRNA:23   AAC--ACGAGAGAUAGAAGACAGUU   1   *||--||||||||*||||||||||* targets:731   CUGAUUGCUCUCUCUCUUCUGUCAU   755 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding protein 1 (LOC8269152), mRNA	squamosa promoter-binding protein 1(LOC8269152)	coding protein	psRNATarget
XM_002516804.2	ncRNA:23   AACACGAGAGAUAGAAGACAGUU   1   **|**|||||||||||||*|||| targets:293   AAGCACUCUCUAUCUUCUAUCAA   315 Target Full Sequence	2.5	PREDICTED: Ricinus communis pentatricopeptide repeat-containing protein At2g36980, mitochondrial (LOC8262370), mRNA	pentatricopeptide repeat-containing protein At2g36980, mitochondrial(LOC8262370)	coding protein	psRNATarget