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BaseInfo

ncRNA ID novel_rco_miR56
Species Ricinus communis
Class miRNA
Genome position NW_002994410.1:16771-16838 [-]
Reference genome JCVI_RCG_1.1
Source SRR1027044
Length 22
Mature sequence(if miRNA) 1 - CAUUUAGAAGCUGAACCAAGCA - 22
Stem-loop(if miRNA) UUUA         ----     A   G UUUU   G
    UGGUUCAGC    AGGUG CCU A    UGU C
    |||||||||    ||||| ||| |    |||
    ACCAAGUCG    UUUAC GGA U    ACA U
ACGA         AAGA     -   G -UUU   G
Stem-loop sequence UUUAUGGUUCAGCAGGUGACCUGAUUUUUGUGCUGACAUUUUGAGGCAUUUAGAAGCUGAACCAAGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002521808.2
ncRNA:22   AC-GAACCAAGUCGAAGAUUUAC   1
  ||-||||||*|||*|||||||||
targets:892   UGUCUUGGUGCAGAUUCUAAAUG   914

2.5 PREDICTED: Ricinus communis CDPK-related kinase 5 (LOC8283282), mRNA CDPK-related kinase 5(LOC8283282) coding protein psRNATarget