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BaseInfo

ncRNA ID	novel_rco_miR54
Species	Ricinus communis
Class	miRNA
Genome position	NW_002994274.1:1892379-1892495 [-]
Reference genome	JCVI_RCG_1.1
Source	SRR3286335
Length	21
Mature sequence(if miRNA)	1 - CGCCAAAGGAGAGUUGCCCUU - 21
Stem-loop(if miRNA)	--    UU            -AAG      UA  AAAAA         U     -UA   A   GGGC  CUCUCCUUUGGC    CAUCGA  AA     UGUGAUAGA CAAUU   UAA U   ||||  ||||||||||||    ||||||  ||     ||||||||| |||||   ||| U   CCCG  GAGAGGAAACCG    GUAGUU  UU     AUAUUAUCU GUUGA   AUU U UU    UU            CUUA      UC  ----G         C     UUA   A
Stem-loop sequence	GGGCUUCUCUCCUUUGGCAAGCAUCGAUAAAAAAAAUGUGAUAGAUCAAUUUAUAAAUUUAUUAAUUAGUUGCUCUAUUAUAGUUCUUUGAUGAUUCGCCAAAGGAGAGUUGCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015719136.1	ncRNA:21   UUCCCGUUGAGAGGAAACCGC   1   *|||||||*|||||||||||* targets:1100   UAGGGCAAAUCUCCUUUGGCA   1120 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   UUCCCGUUGAGAGGAAACCGC   1   **||||||*|||||||||||* targets:739   UUGGGCAAAUCUCCUUUGGCA   759 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   UUCCCGUUGAGAGGAAACCGC   1   **||||||*|||||||||||* targets:1007   CUGGGCAAAUCUCCUUUGGCA   1027 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   UUCCCGUUGAGAGGAAACCGC   1   *|||||||*|||||||||||* targets:1099   UAGGGCAAAUCUCCUUUGGCA   1119 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   UUCCCGUUGAGAGGAAACCGC   1   **||||||*|||||||||||* targets:738   UUGGGCAAAUCUCCUUUGGCA   758 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   UUCCCGUUGAGAGGAAACCGC   1   **||||||*|||||||||||* targets:1006   CUGGGCAAAUCUCCUUUGGCA   1026 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget