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BaseInfo

ncRNA ID	novel_rco_miR44
Species	Ricinus communis
Class	miRNA
Genome position	NW_002994361.1:757926-758046 [-]
Reference genome	JCVI_RCG_1.1
Source	SRR3286334;SRR1027044;SRR1027045
Length	21
Mature sequence(if miRNA)	1 - AGAAUCUUGAUGAUGCUGCAU - 21
Stem-loop(if miRNA)	--                  A    ----------      U    UAGUUUGAUCAAUGGAGGA   GCGGCAUCAUCAAGAUUC CAUA          AGCUUU UUAA                   U   |||||||||||||||||| ||||          |||||| ||||                   G   CGUCGUAGUAGUUCUAAG GUAU          UCGAGA ACCU                   A UA                  A    AUUCUUUCUC      A    CGUUUUCCUCUGGGGAGGG
Stem-loop sequence	GCGGCAUCAUCAAGAUUCACAUAAGCUUUUUUAAUAGUUUGAUCAAUGGAGGAUGAGGGAGGGGUCUCCUUUUGCUCCAAAGAGCUCUCUUUCUUAUAUGAGAAUCUUGAUGAUGCUGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015726023.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1838   CUGCAGCAUCAUCAGGAUUCU   1858 Target Full Sequence	1.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8264035), transcript variant X4, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8264035)	coding protein	psRNATarget
XM_015726022.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1841   CUGCAGCAUCAUCAGGAUUCU   1861 Target Full Sequence	1.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8264035), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8264035)	coding protein	psRNATarget
XM_002530201.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1883   CUGCAGCAUCAUCAGGAUUCU   1903 Target Full Sequence	1.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8264035), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8264035)	coding protein	psRNATarget
XM_015726021.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1886   CUGCAGCAUCAUCAGGAUUCU   1906 Target Full Sequence	1.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8264035), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8264035)	coding protein	psRNATarget
XM_002534353.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1241   CUGCAGCAUCAUCAGGAUUCC   1261 Target Full Sequence	2.5	PREDICTED: Ricinus communis AP2-like ethylene-responsive transcription factor TOE3 (LOC8260999), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC8260999)	coding protein	psRNATarget
XM_015722984.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1468   CUGCAGCAUCAUCAGGAUUCG   1488 Target Full Sequence	2.5	PREDICTED: Ricinus communis floral homeotic protein APETALA 2 (LOC8283831), transcript variant X3, mRNA	floral homeotic protein APETALA 2(LOC8283831)	coding protein	psRNATarget
XM_002525144.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1510   CUGCAGCAUCAUCAGGAUUCG   1530 Target Full Sequence	2.5	PREDICTED: Ricinus communis floral homeotic protein APETALA 2 (LOC8283831), transcript variant X2, mRNA	floral homeotic protein APETALA 2(LOC8283831)	coding protein	psRNATarget
XM_015722983.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||* targets:1513   CUGCAGCAUCAUCAGGAUUCG   1533 Target Full Sequence	2.5	PREDICTED: Ricinus communis floral homeotic protein APETALA 2 (LOC8283831), transcript variant X1, mRNA	floral homeotic protein APETALA 2(LOC8283831)	coding protein	psRNATarget
XM_015722225.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||* targets:1844   UCGCAGCAUCAUCAGGAUUCG   1864 Target Full Sequence	2.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8281967), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8281967)	coding protein	psRNATarget
XM_015722223.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   **||||||||||||=|||||* targets:1844   UCGCAGCAUCAUCAGGAUUCG   1864 Target Full Sequence	2.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8281967), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8281967)	coding protein	psRNATarget