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BaseInfo

ncRNA ID novel_rco_miR42
Species Ricinus communis
Class miRNA
Genome position NW_002994278.1:2233797-2233870 [-]
Reference genome JCVI_RCG_1.1
Source SRR3286333
Length 21
Mature sequence(if miRNA) 1 - UGAUUGAGCCGUGCCAAUAUC - 21
Stem-loop(if miRNA) --      A            A  C   UCU     A
  UGUUGG AUGGCUCAAUCA AU AAA   CCCAA G
  |||||| |||||||||||| || |||   |||||
  AUAACC UGCCGAGUUAGU UA UUU   GGGUU U
CU      G            C  A   CCU     U
Stem-loop sequence UGUUGGAAUGGCUCAAUCAAAUCAAAUCUCCCAAAGUUUUGGGUCCUUUAAUCUGAUUGAGCCGUGCCAAUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002511615.2
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  |||||||||=|||||||||||
targets:1722   GAUAUUGGCGCGGCUCAAUCA   1742

1.5 PREDICTED: Ricinus communis scarecrow-like protein 6 (LOC8265856), mRNA scarecrow-like protein 6(LOC8265856) coding protein psRNATarget
XM_015725220.1
ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1
  |||||||||=|||||||||||
targets:2152   GAUAUUGGCGCGGCUCAAUCA   2172

1.5 PREDICTED: Ricinus communis scarecrow-like protein 27 (LOC8265567), mRNA scarecrow-like protein 27(LOC8265567) coding protein psRNATarget