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BaseInfo

ncRNA ID	novel_rco_miR40
Species	Ricinus communis
Class	miRNA
Genome position	NW_002994368.1:702406-702584 [+]
Reference genome	JCVI_RCG_1.1
Source	SRR3286333
Length	20
Mature sequence(if miRNA)	160 - UUGGACUGAAGGGAGCUCCU - 179
Stem-loop(if miRNA)	--             C   CU      ---U     UAAAGGG  U   G     G   AC        U   G   U     -AC   G  AU   GAGCUUCCUUCAG CCA  CAUGGA    GGGGG       GC GAA UAUCU CCG  UCAUUCAU CAA CAC AGUAG   AAA GG  U   ||||||||||||| |||  ||||||    |||||       || ||| ||||| |||  |||||||| ||| ||| |||||   ||| ||  G   CUCGAGGGAAGUC GGU  GUGCCU    CUCCC       CG UUU AUAGA GGC  AGUAAGUA GUU GUG UCAUC   UUU UC  G UC             A   UC      UUUU     -----UA  U   A     G   GU        U   A   -     GAU   G  AU
Stem-loop sequence	GAGCUUCCUUCAGCCCACUCAUGGAUGGGGGUAAAGGGGCUGAAGUAUCUGCCGACUCAUUCAUUCAAGCACUAGUAGACAAAGGGAUUGGUACUGUUUUAGCUACUGUGAUUGUAUGAAUGAUGCGGGAGAUAAUUUUGCAUCCCUCUUUUUCCGUGCUUGGACUGAAGGGAGCUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015723249.1	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1303   UGGAGCUCCCUUCACUCCAA   1322 Target Full Sequence	1.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X4, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015723250.1	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1316   UGGAGCUCCCUUCACUCCAA   1335 Target Full Sequence	1.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X5, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015723247.1	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1357   UGGAGCUCCCUUCACUCCAA   1376 Target Full Sequence	1.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X1, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_002525528.2	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1358   UGGAGCUCCCUUCACUCCAA   1377 Target Full Sequence	1.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X3, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015723248.1	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1422   UGGAGCUCCCUUCACUCCAA   1441 Target Full Sequence	1.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X2, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015721816.1	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1727   UGGAGCUCCCUUCACUCCAA   1746 Target Full Sequence	1.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8268819), mRNA	transcription factor GAMYB(LOC8268819)	coding protein	psRNATarget
XM_002525092.2	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   |||=|*|||||||||||||| targets:1237   AGGGGAUCCCUUCAGUCCAA   1256 Target Full Sequence	2.0	PREDICTED: Ricinus communis transcription factor TCP4 (LOC8264223), mRNA	transcription factor TCP4(LOC8264223)	coding protein	psRNATarget
XM_015719514.1	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   |||=|**||||||||||||| targets:1737   AGGGGGACCCUUCAGUCCAA   1756 Target Full Sequence	3.0	PREDICTED: Ricinus communis transcription factor TCP2 (LOC8262273), transcript variant X4, mRNA	transcription factor TCP2(LOC8262273)	coding protein	psRNATarget
XM_002519596.2	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   |||=|**||||||||||||| targets:2012   AGGGGGACCCUUCAGUCCAA   2031 Target Full Sequence	3.0	PREDICTED: Ricinus communis transcription factor TCP2 (LOC8262273), transcript variant X1, mRNA	transcription factor TCP2(LOC8262273)	coding protein	psRNATarget
XM_015719512.1	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   |||=|**||||||||||||| targets:2021   AGGGGGACCCUUCAGUCCAA   2040 Target Full Sequence	3.0	PREDICTED: Ricinus communis transcription factor TCP2 (LOC8262273), transcript variant X2, mRNA	transcription factor TCP2(LOC8262273)	coding protein	psRNATarget
XM_015719513.1	ncRNA:20   UCCUCGAGGGAAGUCAGGUU   1   |||=|**||||||||||||| targets:2054   AGGGGGACCCUUCAGUCCAA   2073 Target Full Sequence	3.0	PREDICTED: Ricinus communis transcription factor TCP2 (LOC8262273), transcript variant X3, mRNA	transcription factor TCP2(LOC8262273)	coding protein	psRNATarget