Search result

BaseInfo

ncRNA ID novel_rco_miR33
Species Ricinus communis
Class miRNA
Genome position NW_002994397.1:436525-436613 [+]
Reference genome JCVI_RCG_1.1
Source SRR1027044;SRR1027045
Length 21
Mature sequence(if miRNA) 1 - CAGCCAAGGAUGACUUGCCGA - 21
Stem-loop(if miRNA) --C          GA       AAAUACUCUCU     GUAAUACAUAU
   AGCCAAGGAU  CUUGCCG           UAUAU           A
   ||||||||||  |||||||           |||||
   UCGGUUCUUG  GAGCGGC           ACGUA           U
ACA          UC       ---------CG     GAUGGUAUAUG
Stem-loop sequence CAGCCAAGGAUGACUUGCCGAAAUACUCUCUUAUAUGUAAUACAUAUAUGUAUAUGGUAGAUGCAGCCGGCGAGCUGUUCUUGGCUACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002521306.2
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  |=||*|||||||||||||||*
targets:1096   UUGGGAAGUCAUCCUUGGCUC   1116

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X2, mRNA nuclear transcription factor Y subunit A-3(LOC8284676) coding protein psRNATarget
XM_015720645.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  |=||*|||||||||||||||*
targets:1114   UUGGGAAGUCAUCCUUGGCUC   1134

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X1, mRNA nuclear transcription factor Y subunit A-3(LOC8284676) coding protein psRNATarget
XM_015720647.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  |=||*|||||||||||||||*
targets:1252   UUGGGAAGUCAUCCUUGGCUC   1272

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X4, mRNA nuclear transcription factor Y subunit A-3(LOC8284676) coding protein psRNATarget
XM_015720646.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  |=||*|||||||||||||||*
targets:1352   UUGGGAAGUCAUCCUUGGCUC   1372

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X3, mRNA nuclear transcription factor Y subunit A-3(LOC8284676) coding protein psRNATarget
XM_015720648.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  |=||*|||||||||||||||*
targets:1411   UUGGGAAGUCAUCCUUGGCUC   1431

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X5, mRNA nuclear transcription factor Y subunit A-3(LOC8284676) coding protein psRNATarget
XM_002514028.2
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  **|||||*||||||||||||*
targets:1375   CGGGCAAUUCAUCCUUGGCUU   1395

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X8, mRNA nuclear transcription factor Y subunit A-3(LOC8272511) coding protein psRNATarget
XM_015716264.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  **|||||*||||||||||||*
targets:1379   CGGGCAAUUCAUCCUUGGCUU   1399

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X6, mRNA nuclear transcription factor Y subunit A-3(LOC8272511) coding protein psRNATarget
XM_015716263.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  **|||||*||||||||||||*
targets:1391   CGGGCAAUUCAUCCUUGGCUU   1411

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X5, mRNA nuclear transcription factor Y subunit A-3(LOC8272511) coding protein psRNATarget
XM_015716259.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  **|||||*||||||||||||*
targets:1394   CGGGCAAUUCAUCCUUGGCUU   1414

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X1, mRNA nuclear transcription factor Y subunit A-3(LOC8272511) coding protein psRNATarget
XM_015716265.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  **|||||*||||||||||||*
targets:1689   CGGGCAAUUCAUCCUUGGCUU   1709

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X7, mRNA nuclear transcription factor Y subunit A-3(LOC8272511) coding protein psRNATarget
XM_015716262.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  **|||||*||||||||||||*
targets:1705   CGGGCAAUUCAUCCUUGGCUU   1725

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X4, mRNA nuclear transcription factor Y subunit A-3(LOC8272511) coding protein psRNATarget
XM_015716261.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  **|||||*||||||||||||*
targets:1709   CGGGCAAUUCAUCCUUGGCUU   1729

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X3, mRNA nuclear transcription factor Y subunit A-3(LOC8272511) coding protein psRNATarget
XM_015716260.1
ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1
  **|||||*||||||||||||*
targets:2293   CGGGCAAUUCAUCCUUGGCUU   2313

2.0 PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X2, mRNA nuclear transcription factor Y subunit A-3(LOC8272511) coding protein psRNATarget