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BaseInfo

ncRNA ID	novel_rco_miR32
Species	Ricinus communis
Class	miRNA
Genome position	NW_002994579.1:129749-129835 [-]
Reference genome	JCVI_RCG_1.1
Source	SRR3286332;SRR3286333;SRR3286335;SRR1027044
Length	22
Mature sequence(if miRNA)	66 - UUGACAGAAGAUAGAGAGCACU - 87
Stem-loop(if miRNA)	--U           -         U  C  -   A     U  UG    UGACAGAAGAU AGAGAGCAC GA GA UGA AUGCA GA  G    ||||||||||| ||||||||| || || ||| ||||| ||    ACUGUCUUCUG UCUCUCGUG UU CU ACU UACGU CU  G ACU           A         U  C  C   C     -  CA
Stem-loop sequence	UUGACAGAAGAUAGAGAGCACUGACGAUGAAAUGCAUGAUGGGACUCUGCAUCUCACUCCUUUGUGCUCUCUAGUCUUCUGUCAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015727314.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1061   UGUGCUCUCUCUCUUCUGUCAA   1082 Target Full Sequence	1.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 9 (LOC8277452), mRNA	squamosa promoter-binding-like protein 9(LOC8277452)	coding protein	psRNATarget
XM_015716704.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:2001   CGUGCUCUCUCUCUUCUGUCAA   2022 Target Full Sequence	1.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 2 (LOC8286787), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC8286787)	coding protein	psRNATarget
XM_015716703.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:2237   CGUGCUCUCUCUCUUCUGUCAA   2258 Target Full Sequence	1.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 2 (LOC8286787), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC8286787)	coding protein	psRNATarget
XM_002509404.2	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   |*||||||||*||||||||||| targets:838   AAUGCUCUCUCUCUUCUGUCAA   859 Target Full Sequence	1.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 3 (LOC8258445), mRNA	squamosa promoter-binding-like protein 3(LOC8258445)	coding protein	psRNATarget
XM_015716677.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   =|||||||||*||||||||||* targets:1090   GGUGCUCUCUCUCUUCUGUCAU   1111 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X2, mRNA	squamosa promoter-binding-like protein 16(LOC8286773)	coding protein	psRNATarget
XM_015716678.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   =|||||||||*||||||||||* targets:1382   GGUGCUCUCUCUCUUCUGUCAU   1403 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X3, mRNA	squamosa promoter-binding-like protein 16(LOC8286773)	coding protein	psRNATarget
XM_015716676.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   =|||||||||*||||||||||* targets:1391   GGUGCUCUCUCUCUUCUGUCAU   1412 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X1, mRNA	squamosa promoter-binding-like protein 16(LOC8286773)	coding protein	psRNATarget
XM_015729066.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||= targets:1314   UGUGCUCUCUCUCUUCUGUCAG   1335 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X3, mRNA	squamosa promoter-binding-like protein 6(LOC8264608)	coding protein	psRNATarget
XM_015729065.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||= targets:1182   UGUGCUCUCUCUCUUCUGUCAG   1203 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X2, mRNA	squamosa promoter-binding-like protein 6(LOC8264608)	coding protein	psRNATarget
XM_002512008.2	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||= targets:1309   UGUGCUCUCUCUCUUCUGUCAG   1330 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X4, mRNA	squamosa promoter-binding-like protein 6(LOC8264608)	coding protein	psRNATarget
XM_015729064.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||= targets:1313   UGUGCUCUCUCUCUUCUGUCAG   1334 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X1, mRNA	squamosa promoter-binding-like protein 6(LOC8264608)	coding protein	psRNATarget
XM_015727577.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||* targets:808   CGUGCUCUCUCUCUUCUGUCAU   829 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 7 (LOC8265833), mRNA	squamosa promoter-binding-like protein 7(LOC8265833)	coding protein	psRNATarget
XM_015723469.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||* targets:1173   UGUGCUCUCUCUCUUCUGUCAU   1194 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X3, mRNA	squamosa promoter-binding-like protein 13A(LOC8269206)	coding protein	psRNATarget
XM_015723461.1	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||* targets:1298   UGUGCUCUCUCUCUUCUGUCAU   1319 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X1, mRNA	squamosa promoter-binding-like protein 13A(LOC8269206)	coding protein	psRNATarget
XM_002511111.2	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||* targets:1326   UGUGCUCUCUCUCUUCUGUCAU   1347 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X2, mRNA	squamosa promoter-binding-like protein 13A(LOC8269206)	coding protein	psRNATarget
XM_002517836.2	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   |*||||||||*||||||||||* targets:734   AUUGCUCUCUCUCUUCUGUCAU   755 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding protein 1 (LOC8269152), mRNA	squamosa promoter-binding protein 1(LOC8269152)	coding protein	psRNATarget
XM_002514579.2	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   **||||||||*||||||||||* targets:1838   UCUGCUCUCUCUCUUCUGUCAU   1859 Target Full Sequence	2.5	PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8265059), mRNA	squamosa promoter-binding-like protein 6(LOC8265059)	coding protein	psRNATarget
XM_002516804.2	ncRNA:22   UCACGAGAGAUAGAAGACAGUU   1   ||**|||||||||||||*|||| targets:294   AGCACUCUCUAUCUUCUAUCAA   315 Target Full Sequence	2.5	PREDICTED: Ricinus communis pentatricopeptide repeat-containing protein At2g36980, mitochondrial (LOC8262370), mRNA	pentatricopeptide repeat-containing protein At2g36980, mitochondrial(LOC8262370)	coding protein	psRNATarget