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BaseInfo

ncRNA ID	novel_rco_miR29
Species	Ricinus communis
Class	miRNA
Genome position	NW_002994509.1:22069-22235 [+]
Reference genome	JCVI_RCG_1.1
Source	SRR3286332;SRR3286335
Length	21
Mature sequence(if miRNA)	147 - CUUGGACUGAAGGGAGCUCCC - 167
Stem-loop(if miRNA)	--                  UC  A       GAG       ACU     G U AC       U       CU    A  AUCAA   GAGCUCUCUUCAGUCCAG  CA GGCGGUU   GGCUGGG   UAGCU C G  UCGUUGG UCAAGAG  CAUC UC     U   ||||||||||||||||||  || |||||||   |||||||   ||||| | |  ||||||| |||||||  |||| ||   CUCGAGGGAAGUCAGGUU  GU CUGUCGG   UUGACUU   GUCGA G C  AGCAACC AGUUUUU  GUAG AG     G CC                  CU  A       -UA       -GU     G U GA       U       CU    -  AAUGU
Stem-loop sequence	GAGCUCUCUUCAGUCCAGUCCAAGGCGGUUGAGGGCUGGGACUUAGCUGCUGACUCGUUGGUUCAAGAGCUCAUCAUCAUCAAUGUGUAAGAGAUGUCUUUUUGAUCCAACGAAGCUGGAGCUGUGUUCAGUUAUGGCUGUCAUGUCUUGGACUGAAGGGAGCUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015723249.1	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1303   UGGAGCUCCCUUCACUCCAAU   1323 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X4, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015723250.1	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1316   UGGAGCUCCCUUCACUCCAAU   1336 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X5, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015723247.1	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1357   UGGAGCUCCCUUCACUCCAAU   1377 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X1, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_002525528.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1358   UGGAGCUCCCUUCACUCCAAU   1378 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X3, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015723248.1	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1422   UGGAGCUCCCUUCACUCCAAU   1442 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X2, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015721816.1	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1727   UGGAGCUCCCUUCACUCCAAU   1747 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8268819), mRNA	transcription factor GAMYB(LOC8268819)	coding protein	psRNATarget
XM_002525092.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *||=|*||||||||||||||* targets:1237   AGGGGAUCCCUUCAGUCCAAU   1257 Target Full Sequence	3.0	PREDICTED: Ricinus communis transcription factor TCP4 (LOC8264223), mRNA	transcription factor TCP4(LOC8264223)	coding protein	psRNATarget