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BaseInfo

ncRNA ID novel_rco_miR20
Species Ricinus communis
Class miRNA
Genome position NW_002994292.1:1614913-1615002 [+]
Reference genome JCVI_RCG_1.1
Source SRR3286332;SRR3286333;SRR3286334;SRR3286335;SRR1027044;SRR1027045
Length 21
Mature sequence(if miRNA) 70 - AUUUUAGGAAGGGAAUGAACA - 90
Stem-loop(if miRNA) --        U             UUUCUCUUUUUUUUUG    UC    AA
  UUCAUUCC CUUCCUAAAAUGG                UCGC  UUUC  U
  |||||||| |||||||||||||                ||||  ||||  U
  AAGUAAGG GAAGGAUUUUACC                AGCG  AAAG  A
AC        -             --------------UA    GA    CC
Stem-loop sequence UUCAUUCCUCUUCCUAAAAUGGUUUCUCUUUUUUUUUGUCGCUCUUUCAAUUACCGAAAAGGCGAAUCCAUUUUAGGAAGGGAAUGAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002538962.2
ncRNA:21   ACAAGUAAGGGAAGGAUUUUA   1
  **|||||||||||||*||||*
targets:307   CUUUCAUUCCCUUCCAAAAAG   327

2.5 PREDICTED: Ricinus communis uncharacterized LOC8286165 (LOC8286165), partial mRNA uncharacterized LOC8286165(LOC8286165) coding protein psRNATarget
XM_015717164.1
ncRNA:21   ACAAGUAAGGGAAGGAUUUUA   1
  **|||||||||||||*||||*
targets:1248   CUUUCAUUCCCUUCCAAAAAG   1268

2.5 PREDICTED: Ricinus communis uncharacterized LOC8276825 (LOC8276825), mRNA uncharacterized LOC8276825(LOC8276825) coding protein psRNATarget