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BaseInfo

ncRNA ID novel_rco_miR5
Species Ricinus communis
Class miRNA
Genome position NW_002995010.1:68420-68483 [+]
Reference genome JCVI_RCG_1.1
Source SRR1027045;SRR3286332;SRR3286334;SRR1027044
Length 21
Mature sequence(if miRNA) 44 - UUAGAUGACCAUCAACAAACA - 64
Stem-loop(if miRNA) --         A    C    UU  UU   UG
  UUUGUUGAU GUCA CUAG  AU  UGU  U
  ||||||||| |||| ||||  ||  |||
  AAACAACUA CAGU GAUU  UA  ACA  U
AC         C    A    GG  UU   UA
Stem-loop sequence UUUGUUGAUAGUCACCUAGUUAUUUUGUUGUUAUACAUUAUGGUUAGAUGACCAUCAACAAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_002509649.2
ncRNA:21   ACAA---ACAACUACCAGUAGAUU   1
  ||||---|||||||||||||||||
targets:286   UGUUCGUUGUUGAUGGUCAUCUAA   309

3.0 PREDICTED: Ricinus communis SPX domain-containing membrane protein At4g22990 (LOC8265396), transcript variant X2, mRNA SPX domain-containing membrane protein At4g22990(LOC8265396) coding protein psRNATarget
XM_015715311.1
ncRNA:21   ACAA---ACAACUACCAGUAGAUU   1
  ||||---|||||||||||||||||
targets:286   UGUUCGUUGUUGAUGGUCAUCUAA   309

3.0 PREDICTED: Ricinus communis SPX domain-containing membrane protein At4g22990 (LOC8265396), transcript variant X1, mRNA SPX domain-containing membrane protein At4g22990(LOC8265396) coding protein psRNATarget