ncRNA ID | lus-miR162a |
Species | Linum usitatissimum |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | NA - UCGAUAAACCUCUGCAUCCAG - NA |
Stem-loop(if miRNA) |
GAA     -GU   GAU  AU   A      -AC  -AC  A   --    G    C    C       UC      -    C    GGU    GGGUU   GAU   UG  GAG GAGGGA   AC   GG GUU  UGGA GCAG GGUU AUCGAUC  UUCAUG GUUU UGUG   U    |||||   |||   ||  ||| ||||||   ||   || |||  |||| |||| |||| |||||||  |||||| |||| ||||   C    UUCGA   CUA   AC  CUC CUCCCU   UG   CC CAA  ACCU CGUC CCAA UAGCUAG  AAGUGC CAAA ACAC   C --C     UGU   AGU  CC   C      CCU  AUC  C   CG    A    U    A       CU      A    A    ACU |
Stem-loop sequence | GAAGGGUUGUGAUGAUUGAUGAGAGAGGGAACACACGGAGUUUGGAGGCAGCGGUUCAUCGAUCUCUUCAUGGUUUCUGUGGGUUCCUCACACAAAAACACGUGAAUCGAUCGAUAAACCUCUGCAUCCAGCAACCCCCUAGUUCCUCCCUCCCUCCCCAUGAAUCUGUAGCUUC |
1 | PMID:23291876
"Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes"; Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY; Planta. 237:1149-1161(2013). |