ncRNA ID | lus-miR160d |
Species | Linum usitatissimum |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | NA - UGCCUGGCUCCCUGUAUGCCA - NA |
Stem-loop(if miRNA) |
  U   UAA    G      -U   -U  UG     -   --------GU     U   U -UG      CU  -   U      C     C - U          UG -   AG        CA GC AGC   GGUG CGGUGG  GGG  GG  GUGGU GGU          UGAGU GAG G   UAAUGG  GU GUG GCGUGC UGGCU C C GUAUGCCAUU  C AAG  CUCAUCAA  C || |||   |||| ||||||  |||  ||  ||||| |||          ||||| ||| |   ||||||  || ||| |||||| ||||| | | ||||||||||  | |||  ||||||||  A CG UCG   CCAC GUCAUC  UCC  CC  UACCA CCA          ACUUA CUC C   AUUACC  CA UAU CGUACG ACCGA G G CAUGCGGUAG  G UUC  GGGUAGUU  G   -   UAA    G      CU   UU  CU     A   ACCCCUAUUU     C   - UCA      AU  A   U      U     U A U          GU G   -G        UU |
Stem-loop sequence | GCUAGCUAAGGUGGCGGUGGUGGGUGGUGGUGGUGGUGUUGAGUUGAGUGUGUAAUGGCUGUGUGUGCGUGCCUGGCUCCCUGUAUGCCAUUUGCAAGAGCUCAUCAACACAGUUUUGAUGGGGCUUGGUGGAUGGCGUACUGAGUAGCCAUGCAUGCUUAUAACUACCAUUAACUCCUCCAUUCAUUUAUCCCCAACCAACCAUUCCCUUCCUUCCUACUGGCACCAAUGCUGC |
1 | PMID:23291876
"Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes"; Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY; Planta. 237:1149-1161(2013). |