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BaseInfo

ncRNA ID ath-miR847
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:2165517-2165746 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 159 - UCACUCCUCUUCUUCUUGAUG - 179
Stem-loop(if miRNA) CA   -     UAUUCAAAGUAUCUUAAGUUAAGAAGAGAAUAAGAUUCUUACAUCUUGAUGAAGAGGAAUGGGAAGCCGAAAUCUAAACUGAAACAGAGGCGUCACCCAAUUA
  UUU UCUUG                                                                                                       U
  ||| |||||                                                                                                       C
  UAG UUGUC                                                                                                       A
UA   A     UAAAAAGUGAGGUAGAUUACACAGCUUAUUGUUUAAGAAUGUAGUUCUUCUUCUCCUCACUUUCCGGCUCUAUGUCUAGCUUUGUAUCUAUAGUGAAUGGUUA
Stem-loop sequence CAUUUUCUUGUAUUCAAAGUAUCUUAAGUUAAGAAGAGAAUAAGAUUCUUACAUCUUGAUGAAGAGGAAUGGGAAGCCGAAAUCUAAACUGAAACAGAGGCGUCACCCAAUUAUCAAUUGGUAAGUGAUAUCUAUGUUUCGAUCUGUAUCUCGGCCUUUCACUCCUCUUCUUCUUGAUGUAAGAAUUUGUUAUUCGACACAUUAGAUGGAGUGAAAAAUCUGUUAGAUAU

Reference

1 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).