Search result

BaseInfo

ncRNA ID gra-miR8636
Species Gossypium raimondii
Class miRNA
Genome position chr9:70463171-70463384 [+]
Reference genome Graimondii2_0
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - CGGACCCUCUAACAGUGGAGG - 31
Stem-loop(if miRNA) -   U  C  C         U               A    AAGU    GGCCAA     CUAAAAACAUUUCCUUGGUGGAUUAGGCGCUGCAGUCAAACUCUGUA
 GGC GU GA CGGACCCUC AACAGUGGAGGUGUU UGCU    GGUG      AAAUG                                               A
 ||| || || ||||||||| ||||||||||||||| ||||    ||||      |||||                                               A
 UCG CG CU GCCUGGGAG UUGUUACCUCCAUAA ACGG    CCAC      GAGCC                                               C
C   U  A  A         U               C    --GC    AGAUAC     AAAAUCUGGGCACAAAACAGAGGGAUGAGGUUCCUUUUGGGUUUCCC
Stem-loop sequence GGCUGUCGACCGGACCCUCUAACAGUGGAGGUGUUAUGCUAAGUGGUGGGCCAAAAAUGCUAAAAACAUUUCCUUGGUGGAUUAGGCGCUGCAGUCAAACUCUGUAAACCCCUUUGGGUUUUCCUUGGAGUAGGGAGACAAAACACGGGUCUAAAACCGAGCAUAGACACCCGGGCACAAUACCUCCAUUGUUUGAGGGUCCGAUCAGCUGCUC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).