ncRNA ID | gra-miR8714 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr9:66775782-66776042 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 11 - AUGGACGAAAUGAAAGUAGAG - 31 |
Stem-loop(if miRNA) |
C                       CAA        G      CC   A       C         -     -AC   UU  UGUGUUUGCCCCUUGACUUGUAAUGAAAUUUUUAGUUUGGCCUCUGUAUGA  ACUUUGUCCUCUCUACUUUCAUU   UCCAUCAC UUAGCC  UUG CCAUUUC GUUAAAAAA AUUCC   CUG  CA                                                   U  |||||||||||||||||||||||   |||||||| ||||||  ||| ||||||| ||||||||| |||||   |||  ||  UGAAACGGGAGAGAUGAAAGUAA   AGGUAGUG AAUCGG  AAC GGUAAAG CAAUUUUUU UAGGG   ACC  GG                                                   A -                       AGC        A      AU   C       A         C     CAC   --  UAAAUUCGGUUAGUUUAGACUUGUGUACUCCCCGGUUUCACUUUUGAAGUG |
Stem-loop sequence | CACUUUGUCCUCUCUACUUUCAUUCAAUCCAUCACGUUAGCCCCUUGACCAUUUCCGUUAAAAAAAUUCCACCUGUUCAUGUGUUUGCCCCUUGACUUGUAAUGAAAUUUUUAGUUUGGCCUCUGUAUGAUAGUGAAGUUUUCACUUUGGCCCCUCAUGUGUUCAGAUUUGAUUGGCUUAAAUGGCCACACGGGAUCUUUUUUAACAGAAAUGGCCAAUAGGCUAAAGUGAUGGACGAAAUGAAAGUAGAGAGGGCAAAGU |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |