| ncRNA ID | gra-miR8712 |
| Species | Gossypium raimondii |
| Class | miRNA |
| Genome position | chr9:66376865-66377216 [-] |
| Reference genome | Graimondii2_0 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 11 - AUAUCAUUGGUGAUGUAUCGUCUU - 34 |
| Stem-loop(if miRNA) |
C AUU C C C C UG -- - AAAAAUAAAUAUAAACAA - GAAAAAAUAAAUAUUAAUUAUAUUUAUUAAACAUAAAUAAAUAUAAAAACAUCAAAUUCAAGACCCAAACCUCAAAACCUGAAAUACAAAAAUUAAA AAUUA AUAAGAUGA ACAUCAUCA U GUGUAAAA AAAAAAUAU AA GGG UUU AUUUAU UU A ||||| ||||||||| ||||||||| | |||||||| ||||||||| || ||| ||| |||||| || G UUAAU UAUUCUGCU UGUAGUGGU A UAUAUUUU UUUUUUAUA UU UGA CUU UUUAUU AU U - AAU A U C A GU AG A ------------------ U UUUAAUUGAAAUAAAUUUGUAAUAAUUUAUAAUUAUUAAUAUUAAUAAAACAAAGAGGAAAUCCAAAACCUAGAGCUCAAAAUCCAAAGAUCAAAAC |
| Stem-loop sequence | CAAUUAAUUAUAAGAUGACACAUCAUCACUCGUGUAAAACAAAAAAUAUUGAAGGGUUUAAAAAUAAAUAUAAACAAAUUUAUUUGAAAAAAUAAAUAUUAAUUAUAUUUAUUAAACAUAAAUAAAUAUAAAAACAUCAAAUUCAAGACCCAAACCUCAAAACCUGAAAUACAAAAAUUAAAAGUCAAAACUAGAAACCUAAAACUCGAGAUCCAAAACCUAAAGGAGAAACAAAAUAAUUAUAAUUAUUAAUAUUUAAUAAUGUUUAAAUAAAGUUAAUUUUAUUUAUUUUUCAAGUGAUUUGAUAUUUUUUAUUUUAUAUCAUUGGUGAUGUAUCGUCUUAUUAAUAAUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_012585271.1 |
|
2.5 | PREDICTED: Gossypium raimondii phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like (LOC105765980), mRNA | phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like(LOC105765980) | coding protein | psRNATarget |
| 1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |