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BaseInfo

ncRNA ID	gra-miR8693
Species	Gossypium raimondii
Class	miRNA
Genome position	chr9:64992845-64992949 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	72 - AGGAUGAAAAUAUUGAUGUAGCAU - 95
Stem-loop(if miRNA)	C                 U      A            --UUUUA      UU  CAAUGGUUUAAUGUUAC UCAGUA UUUCAUCCUGAA       GGAUUU  A  ||||||||||||||||| |||||| ||||||||||||       ||||||  GUUAUCAAAUUACGAUG AGUUAU AAAGUAGGACUU       UUUAGA  U -                 U      A            UUUUUAG      UU
Stem-loop sequence	CCAAUGGUUUAAUGUUACUUCAGUAAUUUCAUCCUGAAUUUUAGGAUUUUUAUUUAGAUUUGAUUUUUUUCAGGAUGAAAAUAUUGAUGUAGCAUUAAACUAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012602071.1	ncRNA:24   UACGAUGUAGUUAUAAAAGUAGGA   1   ||||-||*||||||*||||||||| targets:904   AUGC-ACCUCAAUAGUUUCAUCCU   926 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii phenylalanine N-monooxygenase (LOC105778382), transcript variant X1, mRNA	phenylalanine N-monooxygenase(LOC105778382)	coding protein	psRNATarget
XM_012602072.1	ncRNA:24   UACGAUGUAGUUAUAAAAGUAGGA   1   ||||-||*||||||*||||||||| targets:906   AUGC-ACCUCAAUAGUUUCAUCCU   928 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii phenylalanine N-monooxygenase (LOC105778382), transcript variant X2, mRNA	phenylalanine N-monooxygenase(LOC105778382)	coding protein	psRNATarget
XM_012602073.1	ncRNA:24   UACGAUGUAGUUAUAAAAGUAGGA   1   ||||-||*||||||*||||||||| targets:887   AUGC-ACCUCAAUAGUUUCAUCCU   909 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii phenylalanine N-monooxygenase (LOC105778382), transcript variant X3, mRNA	phenylalanine N-monooxygenase(LOC105778382)	coding protein	psRNATarget
XM_012603900.1	ncRNA:24   UACGAUGUAGUUAUAAAAGUAGGA   1   *|*||*||||||||||*||||||| targets:3604   UUUCUUCAUCAAUAUUAUCAUCCU   3627 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative phospholipid-transporting ATPase 4 (LOC105779904), transcript variant X1, mRNA	putative phospholipid-transporting ATPase 4(LOC105779904)	coding protein	psRNATarget
XM_012603901.1	ncRNA:24   UACGAUGUAGUUAUAAAAGUAGGA   1   *|*||*||||||||||*||||||| targets:3574   UUUCUUCAUCAAUAUUAUCAUCCU   3597 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii putative phospholipid-transporting ATPase 4 (LOC105779904), transcript variant X2, mRNA	putative phospholipid-transporting ATPase 4(LOC105779904)	coding protein	psRNATarget
XM_012636476.1	ncRNA:24   UACGAUGUAGUUAUAAAAGUAGGA   1   **||*||||||||||||||*|||* targets:602   UGGCAACAUCAAUAUUUUCCUCCA   625 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii molybdate-anion transporter-like (LOC105804001), mRNA	molybdate-anion transporter-like(LOC105804001)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).