ncRNA ID | gra-miR8657e |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr9:30750731-30750940 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 177 - UGUAGUAAUUGUAGAAGUUCAGGG - 200 |
Stem-loop(if miRNA) |
UA             U          G  C    ACUAUUUCGCUAUUUUUCUUUUUUCAC       - ACG   UCAUGAUCUAGAAUAUAAAAUUAUUCAUUUAUUAGCA   GAUUGAAUUGUAG AAUUGUAGAA UU AGGG                           GAGUAUA U   AGA                                     U   ||||||||||||| |||||||||| || ||||                           ||||||| |   |||                                     A   CUAAUUUAAUGUU UUAACAUUUU AA UCCC                           AAAUUUU U   AUU                                     U CC             U          G  A    ---------------GUUAACACAUUU       U ---   UUCCCAUAAUAUAAAAUUUUACUUAACCUUUACCUUA |
Stem-loop sequence | UAGAUUGAAUUGUAGUAAUUGUAGAAGUUCAGGGACUAUUUCGCUAUUUUUCUUUUUUCACGAGUAUAUACGAGAUCAUGAUCUAGAAUAUAAAAUUAUUCAUUUAUUAGCAUAUAUUCCAUUUCCAAUUCAUUUUAAAAUAUAAUACCCUUUUAUUUUUUAAAUUUACACAAUUGCCCUAAAGUUUUACAAUUUUUGUAAUUUAAUCCC |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |