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BaseInfo

ncRNA ID gra-miR8657e
Species Gossypium raimondii
Class miRNA
Genome position chr9:30750731-30750940 [-]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 177 - UGUAGUAAUUGUAGAAGUUCAGGG - 200
Stem-loop(if miRNA) UA             U          G  C    ACUAUUUCGCUAUUUUUCUUUUUUCAC       - ACG   UCAUGAUCUAGAAUAUAAAAUUAUUCAUUUAUUAGCA
  GAUUGAAUUGUAG AAUUGUAGAA UU AGGG                           GAGUAUA U   AGA                                     U
  ||||||||||||| |||||||||| || ||||                           ||||||| |   |||                                     A
  CUAAUUUAAUGUU UUAACAUUUU AA UCCC                           AAAUUUU U   AUU                                     U
CC             U          G  A    ---------------GUUAACACAUUU       U ---   UUCCCAUAAUAUAAAAUUUUACUUAACCUUUACCUUA
Stem-loop sequence UAGAUUGAAUUGUAGUAAUUGUAGAAGUUCAGGGACUAUUUCGCUAUUUUUCUUUUUUCACGAGUAUAUACGAGAUCAUGAUCUAGAAUAUAAAAUUAUUCAUUUAUUAGCAUAUAUUCCAUUUCCAAUUCAUUUUAAAAUAUAAUACCCUUUUAUUUUUUAAAUUUACACAAUUGCCCUAAAGUUUUACAAUUUUUGUAAUUUAAUCCC

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).