Search result

BaseInfo

ncRNA ID	gra-miR8689
Species	Gossypium raimondii
Class	miRNA
Genome position	chr9:30068577-30069045 [+]
Reference genome	Graimondii2_0
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - AGAGGUGCUCAUGGGCUGGGUCGG - 34
Stem-loop(if miRNA)	GUUGAGG   -----   GGUGCUCAUGGGCUGGGUCGGGCCAGGCCCCAAAAAAUUCAGCUCGAGUCCUAGGCCAGAGCUCAACUCGACUCAAAAUAUGGGCUUGAAAUUUUGUCCAGGCCCGGCCCAAGAAAAAAAUCUUAAGCCCGAGCCCGGCCCGACCCAUUUUUUAAAUAAAACACCAAAAAUUUAUUUUAAAAUAAAAAAUAAAAAAAUAUUUUAAAAAUAAUAAAAAUA        AGU     AGA                                                                                                                                                                                                                           U        |||     |||                                                                                                                                                                                                                           A        CCU     AGU                                                                                                                                                                                                                           U ---AAAC   AUAUA   AAUUAACUGAGGAGUUAUCUCCACUAGUACCCAGCCCGCCGGGCUGGGCCGGACCAGGCUGCCGGUCAGGCUUUAUACUCUCCCAAGCCUAUUUUUAUAUCCGAGCUUUAUACUCGAACCCGUUUUUUUUGCUCCGGACAAAUUUUUUACCCAGCCCGGAGCCCGUGAUGAAAAAACCGGGCCCGGGACGAGACGGGCCGGGCUUAUUUAUUAUUUAUA
Stem-loop sequence	GUUGAGGAGUAGAGGUGCUCAUGGGCUGGGUCGGGCCAGGCCCCAAAAAAUUCAGCUCGAGUCCUAGGCCAGAGCUCAACUCGACUCAAAAUAUGGGCUUGAAAUUUUGUCCAGGCCCGGCCCAAGAAAAAAAUCUUAAGCCCGAGCCCGGCCCGACCCAUUUUUUAAAUAAAACACCAAAAAUUUAUUUUAAAAUAAAAAAUAAAAAAAUAUUUUAAAAAUAAUAAAAAUAUAUAUAUUUAUUAUUUAUUCGGGCCGGGCAGAGCAGGGCCCGGGCCAAAAAAGUAGUGCCCGAGGCCCGACCCAUUUUUUAAACAGGCCUCGUUUUUUUUGCCCAAGCUCAUAUUUCGAGCCUAUAUUUUUAUCCGAACCCUCUCAUAUUUCGGACUGGCCGUCGGACCAGGCCGGGUCGGGCCGCCCGACCCAUGAUCACCUCUAUUGAGGAGUCAAUUAAUGAAUAUAUCCCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012623318.1	ncRNA:24   GGCUGGGUCGGGUACUCGUGGAGA   1   |||=|||||||||||||||||||| targets:135   CCGGCCCAGCCCAUGAGCACCUCU   158 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105794239 (LOC105794239), transcript variant X9, mRNA	uncharacterized LOC105794239(LOC105794239)	coding protein	psRNATarget
XM_012625799.1	ncRNA:24   GGCUGGGUCGGGUACUCGUGGAGA   1   |=|||||||=|||||||||||||| targets:530   CUGACCCAGUCCAUGAGCACCUCU   553 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105796226 (LOC105796226), mRNA	uncharacterized LOC105796226(LOC105796226)	coding protein	psRNATarget
XM_012584182.1	ncRNA:24   GGCUGGGUCGGGUACUCGUGGAGA   1   |=|=|||=||||||||*||||||| targets:462   CUGGCCCGGCCCAUGAUCACCUCU   485 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii cysteine--tRNA ligase, cytoplasmic-like (LOC105765209), transcript variant X2, mRNA	cysteine--tRNA ligase, cytoplasmic-like(LOC105765209)	coding protein	psRNATarget
XM_012624578.1	ncRNA:24   GGCUGGGUCGGGUACUCGUGGAGA   1   ||*||||||*||||||*||||||| targets:851   CCAACCCAGGCCAUGAACACCUCU   874 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105795103 (LOC105795103), transcript variant X5, mRNA	hypothetical protein(LOC105795103)	coding protein	psRNATarget
XM_012611666.1	ncRNA:24   GGCUGGGUCGGGUACUCGUGGAGA   1   =*|=|||=*|=||||||||||||| targets:16   UAGGCCCGACUCAUGAGCACCUCU   39 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105785561 (LOC105785561), transcript variant X2, mRNA	uncharacterized LOC105785561(LOC105785561)	coding protein	psRNATarget

Reference

1	PMID:24044642 "Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013).