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BaseInfo

ncRNA ID gra-miR8706b
Species Gossypium raimondii
Class miRNA
Genome position chr9:24856239-24856339 [+]
Reference genome Graimondii2_0
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - AGUUUUAGGAUUGAUUUGAUGAAA - 34
Stem-loop(if miRNA) U         A       GA        A       ---    -       
 UUUAAUUUG GUUUUAG  UUGAUUUG UGAAAGU   UAAU GGCUAAUA
 ||||||||| |||||||  |||||||| |||||||   |||| |||||||U
 AAAUUAAGC CAAAAUC  AACUAAAC ACUUUUA   AUUA UCGAUUAU
C         A       UC        G       AAU    A       
Stem-loop sequence UUUUAAUUUGAGUUUUAGGAUUGAUUUGAUGAAAGUUAAUGGCUAAUAUUAUUAGCUAAUUAUAAAUUUUCAGCAAAUCAACUCUAAAACACGAAUUAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012628940.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1957   UCGCAUCAAGUCAAUCCCAAAACU   1980

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X5, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628938.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1892   UCGCAUCAAGUCAAUCCCAAAACU   1915

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X3, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628937.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1852   UCGCAUCAAGUCAAUCCCAAAACU   1875

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X2, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628943.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1724   UCGCAUCAAGUCAAUCCCAAAACU   1747

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X11, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628942.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1740   UCGCAUCAAGUCAAUCCCAAAACU   1763

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X7, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628936.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1724   UCGCAUCAAGUCAAUCCCAAAACU   1747

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X1, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628939.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1700   UCGCAUCAAGUCAAUCCCAAAACU   1723

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X4, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628941.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1572   UCGCAUCAAGUCAAUCCCAAAACU   1595

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X6, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628944.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1724   UCGCAUCAAGUCAAUCCCAAAACU   1747

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X12, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628945.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1725   UCGCAUCAAGUCAAUCCCAAAACU   1748

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X13, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628947.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1724   UCGCAUCAAGUCAAUCCCAAAACU   1747

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X19, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget
XM_012628946.1
ncRNA:24   AAAGUAGUUUAGUUAGGAUUUUGA   1
  |**||||||=|||||||*||||||
targets:1724   UCGCAUCAAGUCAAUCCCAAAACU   1747

2.5 PREDICTED: Gossypium raimondii QWRF motif-containing protein 8-like (LOC105798736), transcript variant X17, mRNA QWRF motif-containing protein 8-like(LOC105798736) coding protein psRNATarget

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).
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