| ncRNA ID | ath-miR870-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:21395545-21395629 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 60 - AAGAACAUCAAAUUAGAAUGU - 80 |
| Stem-loop(if miRNA) |
- A A AC A GAUCGAAGAA CAUCAAAUUAGA UGUG UGCAAA UUAG C |||||||||| |||||||||||| |||| |||||| |||| CUAGCUUCUU GUGGUUUAAUCU ACAC ACGUUU AAUC U U A A AC C |
| Stem-loop sequence | GAUCGAAGAACAUCAAAUUAGAAUGUGAUGCAAAACUUAGACUCCUAACAUUUGCAACACAAUCUAAUUUGGUGUUUCUUCGAUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BX823557.1 |
|
2.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS50ZG02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget |
| 1 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
| 2 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |