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BaseInfo

ncRNA ID gra-miR8738b
Species Gossypium raimondii
Class miRNA
Genome position chr9:21307832-21308156 [-]
Reference genome Graimondii2_0
Source miRBase
Length 23
Mature sequence(if miRNA) 293 - GUUAACUUUAACGGUCAACGGUU - 315
Stem-loop(if miRNA) UUUGGG GU                C   G      A     GGUUAAA G   UUUUCAUGCAUUUU     UUU     -------  UUUUU        UUUUACAAUUUUUUAUAAUUUUUUAUGAUUUUUAUAAAUUUAUUUUCUAAUUUUUAAUAAAUUUUAUAUAUUUUCU
      G  CGUUAACUUUAACGGU AAC GUUAAA UUAAU       G UCC              AUAAA   UUAAU       GA     UUAUAAAA                                                                            A
      |  |||||||||||||||| ||| |||||| |||||       | |||              |||||   |||||       ||     ||||||||
      C  GUAAUUGAAAUUGUUA UUG CAAUUU AAUUG       U AGG              AUUAA   AAAAG       CG     GUGGGCAC                                                                            U
GGGAAA UG                A   G      A     ------A G   --------------     ---     UUAAUUU  -----        AGUUGGUGCCACACUGUACACCGUUUUUUUAAUAUUUUUUGUUUUUAGUUAUUUUCAAUAUUUUUUAAUUUAAAAU
Stem-loop sequence UUUGGGGGUCGUUAACUUUAACGGUCAACGGUUAAAAUUAAUGGUUAAAGGUCCUUUUCAUGCAUUUUAUAAAUUUUUAAUGAUUUUUUUAUAAAAUUUUACAAUUUUUUAUAAUUUUUUAUGAUUUUUAUAAAUUUAUUUUCUAAUUUUUAAUAAAUUUUAUAUAUUUUCUAUUAAAAUUUAAUUUUUUAUAACUUUUAUUGAUUUUUGUUUUUUAUAAUUUUUUUGCCACAUGUCACACCGUGGUUGACACGGGUGGCUUUAAUUGAAAAAAUUAGGAGUAGUUAAAUUUAACGGUUAAUUGUUAAAGUUAAUGGUCAAAGGG

Reference

1 PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells";
Xue W, Wang Z, Du M, Liu Y, Liu JY;
BMC Genomics. 14:629(2013).