ncRNA ID | gra-miR8738b |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | chr9:21307832-21308156 [-] |
Reference genome | Graimondii2_0 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 293 - GUUAACUUUAACGGUCAACGGUU - 315 |
Stem-loop(if miRNA) |
UUUGGG GU                C   G      A     GGUUAAA G   UUUUCAUGCAUUUU     UUU     -------  UUUUU        UUUUACAAUUUUUUAUAAUUUUUUAUGAUUUUUAUAAAUUUAUUUUCUAAUUUUUAAUAAAUUUUAUAUAUUUUCU       G  CGUUAACUUUAACGGU AAC GUUAAA UUAAU       G UCC              AUAAA   UUAAU       GA     UUAUAAAA                                                                            A       |  |||||||||||||||| ||| |||||| |||||       | |||              |||||   |||||       ||     ||||||||       C  GUAAUUGAAAUUGUUA UUG CAAUUU AAUUG       U AGG              AUUAA   AAAAG       CG     GUGGGCAC                                                                            U GGGAAA UG                A   G      A     ------A G   --------------     ---     UUAAUUU  -----        AGUUGGUGCCACACUGUACACCGUUUUUUUAAUAUUUUUUGUUUUUAGUUAUUUUCAAUAUUUUUUAAUUUAAAAU |
Stem-loop sequence | UUUGGGGGUCGUUAACUUUAACGGUCAACGGUUAAAAUUAAUGGUUAAAGGUCCUUUUCAUGCAUUUUAUAAAUUUUUAAUGAUUUUUUUAUAAAAUUUUACAAUUUUUUAUAAUUUUUUAUGAUUUUUAUAAAUUUAUUUUCUAAUUUUUAAUAAAUUUUAUAUAUUUUCUAUUAAAAUUUAAUUUUUUAUAACUUUUAUUGAUUUUUGUUUUUUAUAAUUUUUUUGCCACAUGUCACACCGUGGUUGACACGGGUGGCUUUAAUUGAAAAAAUUAGGAGUAGUUAAAUUUAACGGUUAAUUGUUAAAGUUAAUGGUCAAAGGG |
1 | PMID:24044642
"Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells"; Xue W, Wang Z, Du M, Liu Y, Liu JY; BMC Genomics. 14:629(2013). |